--- license: cc-by-nc-nd-4.0 extra_gated_fields: Name: text Company: text Country: country Specific date: date_picker I want to use this model for: type: select options: - Research - Education - label: Other value: other I agree not to file patents on any sequences generated by this model: checkbox I agree to use this model for non-commercial use ONLY: checkbox --- **PPI-Llama2: *De Novo* Generation of Binding Proteins Conditioned on Target Sequence Alone** ![image/png](https://cdn-uploads.huggingface.co/production/uploads/64cd5b3f0494187a9e8b7c69/jlxqjz0FdmOVd_QUJQtDn.png) The targeting of disease-driving proteins is a critical goal of biomedicine. However, many of these proteins do not possess accessible small molecule binding pockets and are oftentimes conformationally disordered, precluding binder design via structure-dependent methods. Here, we present **PPI-Llama2**, which leverages Meta's Llama2 autoregressive language model architecture to *de novo* generate protein binders conditioned directly on target sequences. Without relying on structural data and training only on protein-protein interaction (PPI) sequences, PPI-Llama2 effectively learns the evolutionary semantics of PPIs, enabling the generation of both novel and biologically-plausible binders.