modeling_mutbert.py

# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION.  All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch BERT model with ROPE."""


import math
from dataclasses import dataclass
from typing import Optional, Tuple, Union

import torch
import torch.utils.checkpoint
import torch.nn.functional as F
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from transformers import PretrainedConfig
from transformers.activations import ACT2FN
from transformers.modeling_outputs import (
    BaseModelOutputWithPooling,
    MaskedLMOutput,
    SequenceClassifierOutput,
)
from transformers.modeling_utils import PreTrainedModel
from transformers.pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from transformers.utils import (
    ModelOutput,
    logging,
)

logger = logging.get_logger(__name__)


class RoPEBertConfig(PretrainedConfig):

    model_type = "bert"

    def __init__(
        self,
        vocab_size=9,
        hidden_size=768,
        num_hidden_layers=12,
        num_attention_heads=12,
        intermediate_size=3072,
        hidden_act="gelu",
        pooler_type="mean",  # first_token_transform
        hidden_dropout_prob=0.1,
        attention_probs_dropout_prob=0.1,
        max_position_embeddings=512,
        type_vocab_size=2,
        initializer_range=0.02,
        layer_norm_eps=1e-12,
        pad_token_id=0,
        classifier_dropout=None,
        rope_theta=10000.0,
        rope_scaling=None,
        **kwargs,
    ):
        super().__init__(pad_token_id=pad_token_id, **kwargs)

        self.vocab_size = vocab_size
        self.hidden_size = hidden_size
        self.num_hidden_layers = num_hidden_layers
        self.num_attention_heads = num_attention_heads
        self.hidden_act = hidden_act
        self.intermediate_size = intermediate_size
        self.hidden_dropout_prob = hidden_dropout_prob
        self.attention_probs_dropout_prob = attention_probs_dropout_prob
        self.max_position_embeddings = max_position_embeddings
        self.type_vocab_size = type_vocab_size
        self.initializer_range = initializer_range
        self.layer_norm_eps = layer_norm_eps
        self.classifier_dropout = classifier_dropout
        self.rope_theta = rope_theta
        self.rope_scaling = rope_scaling
        self.pooler_type = pooler_type

        self._pooler_type_validation()
        self._rope_scaling_validation()

    def _pooler_type_validation(self):
        if self.pooler_type not in ['first_token_transform', 'mean']:
            raise ValueError(
                f"`pooler_type` must be one of `first_token_transform` or `mean`, got {self.pooler_type}"
            )

    def _rope_scaling_validation(self):
        """
        Validate the `rope_scaling` configuration.
        """
        if self.rope_scaling is None:
            return

        if not isinstance(self.rope_scaling, dict) or len(self.rope_scaling) != 2:
            raise ValueError(
                "`rope_scaling` must be a dictionary with with two fields, `type` and `factor`, "
                f"got {self.rope_scaling}"
            )
        rope_scaling_type = self.rope_scaling.get("type", None)
        rope_scaling_factor = self.rope_scaling.get("factor", None)
        if rope_scaling_type is None or rope_scaling_type not in ["linear", "dynamic"]:
            raise ValueError(
                f"`rope_scaling`'s type field must be one of ['linear', 'dynamic'], got {rope_scaling_type}"
            )
        if rope_scaling_factor is None or not isinstance(rope_scaling_factor, float) or rope_scaling_factor <= 1.0:
            raise ValueError(f"`rope_scaling`'s factor field must be a float > 1, got {rope_scaling_factor}")


class RoPEBertEmbeddings(nn.Module):
    """Construct the embeddings from word, token_type embeddings."""

    def __init__(self, config):
        super().__init__()
        self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
        self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)

        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(
        self,
        input_ids: Optional[torch.FloatTensor] = None,
        token_type_ids: Optional[torch.LongTensor] = None,
        inputs_embeds: Optional[torch.FloatTensor] = None,
    ) -> torch.Tensor:
        if inputs_embeds is None:
            # input_ids: b, l, v
            inputs_embeds = torch.matmul(input_ids, self.word_embeddings.weight)
            # self.word_embeddings(input_ids)
        token_type_embeddings = self.token_type_embeddings(token_type_ids)

        embeddings = inputs_embeds + token_type_embeddings

        embeddings = self.LayerNorm(embeddings)
        embeddings = self.dropout(embeddings)
        return embeddings


class BertRotaryEmbedding(nn.Module):
    def __init__(self, dim, max_position_embeddings=512, base=10000, device=None):
        super().__init__()

        self.dim = dim
        self.max_position_embeddings = max_position_embeddings
        self.base = base
        inv_freq = 1.0 / (self.base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
        self.register_buffer("inv_freq", inv_freq, persistent=False)

        # Build here to make `torch.jit.trace` work.
        self._set_cos_sin_cache(
            seq_len=max_position_embeddings, device=self.inv_freq.device, dtype=torch.get_default_dtype()
        )

    def _set_cos_sin_cache(self, seq_len, device, dtype):
        self.max_seq_len_cached = seq_len
        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)

        freqs = torch.einsum("i,j->ij", t, self.inv_freq)  # equal to torch.outer(t, inv_freq)
        # Different from paper, but it uses a different permutation in order to obtain the same calculation
        emb = torch.cat((freqs, freqs), dim=-1)
        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)

    def forward(self, x, seq_len=None):
        # x: [bs, num_attention_heads, seq_len, head_size]
        if seq_len > self.max_seq_len_cached:
            self._set_cos_sin_cache(seq_len=seq_len, device=x.device, dtype=x.dtype)

        return (
            self.cos_cached[:seq_len].to(dtype=x.dtype),
            self.sin_cached[:seq_len].to(dtype=x.dtype),
        )


class BertLinearScalingRotaryEmbedding(BertRotaryEmbedding):
    """BertRotaryEmbedding extended with linear scaling. Credits to the Reddit user /u/kaiokendev"""

    def __init__(self, dim, max_position_embeddings=512, base=10000, device=None, scaling_factor=1.0):
        self.scaling_factor = scaling_factor
        super().__init__(dim, max_position_embeddings, base, device)

    def _set_cos_sin_cache(self, seq_len, device, dtype):
        self.max_seq_len_cached = seq_len
        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)
        t = t / self.scaling_factor

        freqs = torch.einsum("i,j->ij", t, self.inv_freq)
        # Different from paper, but it uses a different permutation in order to obtain the same calculation
        emb = torch.cat((freqs, freqs), dim=-1)
        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)


class BertDynamicNTKScalingRotaryEmbedding(BertRotaryEmbedding):
    """BertRotaryEmbedding extended with Dynamic NTK scaling. Credits to the Reddit users /u/bloc97 and /u/emozilla"""

    def __init__(self, dim, max_position_embeddings=512, base=10000, device=None, scaling_factor=1.0):
        self.scaling_factor = scaling_factor
        super().__init__(dim, max_position_embeddings, base, device)

    def _set_cos_sin_cache(self, seq_len, device, dtype):
        self.max_seq_len_cached = seq_len

        if seq_len > self.max_position_embeddings:
            base = self.base * (
                (self.scaling_factor * seq_len / self.max_position_embeddings) - (self.scaling_factor - 1)
            ) ** (self.dim / (self.dim - 2))
            inv_freq = 1.0 / (base ** (torch.arange(0, self.dim, 2).float().to(device) / self.dim))
            self.register_buffer("inv_freq", inv_freq, persistent=False)

        t = torch.arange(self.max_seq_len_cached, device=device, dtype=self.inv_freq.dtype)

        freqs = torch.einsum("i,j->ij", t, self.inv_freq)
        # Different from paper, but it uses a different permutation in order to obtain the same calculation
        emb = torch.cat((freqs, freqs), dim=-1)
        self.register_buffer("cos_cached", emb.cos().to(dtype), persistent=False)
        self.register_buffer("sin_cached", emb.sin().to(dtype), persistent=False)


def rotate_half(x):
    """Rotates half the hidden dims of the input."""
    x1 = x[..., : x.shape[-1] // 2]
    x2 = x[..., x.shape[-1] // 2 :]
    return torch.cat((-x2, x1), dim=-1)


def apply_rotary_pos_emb(q, k, cos, sin, position_ids, unsqueeze_dim=1):
    """Applies Rotary Position Embedding to the query and key tensors.
    Args:
        q (`torch.Tensor`): The query tensor.
        k (`torch.Tensor`): The key tensor.
        cos (`torch.Tensor`): The cosine part of the rotary embedding.
        sin (`torch.Tensor`): The sine part of the rotary embedding.
        position_ids (`torch.Tensor`):
            The position indices of the tokens corresponding to the query and key tensors. For example, this can be
            used to pass offsetted position ids when working with a KV-cache.
        unsqueeze_dim (`int`, *optional*, defaults to 1):
            The 'unsqueeze_dim' argument specifies the dimension along which to unsqueeze cos[position_ids] and
            sin[position_ids] so that they can be properly broadcasted to the dimensions of q and k. For example, note
            that cos[position_ids] and sin[position_ids] have the shape [batch_size, seq_len, head_dim]. Then, if q and
            k have the shape [batch_size, heads, seq_len, head_dim], then setting unsqueeze_dim=1 makes
            cos[position_ids] and sin[position_ids] broadcastable to the shapes of q and k. Similarly, if q and k have
            the shape [batch_size, seq_len, heads, head_dim], then set unsqueeze_dim=2.
    Returns:
        `tuple(torch.Tensor)` comprising of the query and key tensors rotated using the Rotary Position Embedding.
    """
    cos = cos[position_ids].unsqueeze(unsqueeze_dim)
    sin = sin[position_ids].unsqueeze(unsqueeze_dim)
    q_embed = (q * cos) + (rotate_half(q) * sin)
    k_embed = (k * cos) + (rotate_half(k) * sin)
    return q_embed, k_embed


class RoPEBertSelfAttention(nn.Module):

    def __init__(self, config: RoPEBertConfig):
        super().__init__()
        if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
            raise ValueError(
                f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
                f"heads ({config.num_attention_heads})"
            )

        self.num_attention_heads = config.num_attention_heads
        self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
        self.all_head_size = self.num_attention_heads * self.attention_head_size

        self.max_position_embeddings = config.max_position_embeddings
        self.rope_theta = config.rope_theta

        self.query = nn.Linear(config.hidden_size, self.all_head_size)
        self.key = nn.Linear(config.hidden_size, self.all_head_size)
        self.value = nn.Linear(config.hidden_size, self.all_head_size)

        self.dropout = nn.Dropout(config.attention_probs_dropout_prob)

        self.config = config

        self._init_rope()

    def _init_rope(self):
        if self.config.rope_scaling is None:
            self.rotary_emb = BertRotaryEmbedding(
                self.attention_head_size,
                max_position_embeddings=self.max_position_embeddings,
                base=self.rope_theta,
            )
        else:
            scaling_type = self.config.rope_scaling["type"]
            scaling_factor = self.config.rope_scaling["factor"]
            if scaling_type == "linear":
                self.rotary_emb = BertLinearScalingRotaryEmbedding(
                    self.attention_head_size,
                    max_position_embeddings=self.max_position_embeddings,
                    scaling_factor=scaling_factor,
                    base=self.rope_theta,
                )
            elif scaling_type == "dynamic":
                self.rotary_emb = BertDynamicNTKScalingRotaryEmbedding(
                    self.attention_head_size,
                    max_position_embeddings=self.max_position_embeddings,
                    scaling_factor=scaling_factor,
                    base=self.rope_theta,
                )
            else:
                raise ValueError(f"Unknown RoPE scaling type {scaling_type}")

    def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
        new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
        x = x.view(new_x_shape)
        return x.permute(0, 2, 1, 3)

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        position_ids: Optional[torch.LongTensor] = None,
        output_attentions: Optional[bool] = False,
    ) -> Tuple[torch.Tensor]:
        query_layer = self.transpose_for_scores(self.query(hidden_states))
        key_layer = self.transpose_for_scores(self.key(hidden_states))
        value_layer = self.transpose_for_scores(self.value(hidden_states))

        kv_seq_len = key_layer.shape[-2]
        cos, sin = self.rotary_emb(value_layer, seq_len=kv_seq_len)
        query_layer, key_layer = apply_rotary_pos_emb(query_layer, key_layer, cos, sin, position_ids)

        # Take the dot product between "query" and "key" to get the raw attention scores.
        attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))

        attention_scores = attention_scores / math.sqrt(self.attention_head_size)
        if attention_mask is not None:
            # Apply the attention mask is (precomputed for all layers in BertModel forward() function)
            attention_scores = attention_scores + attention_mask

        # Normalize the attention scores to probabilities.
        attention_probs = nn.functional.softmax(attention_scores, dim=-1)

        # This is actually dropping out entire tokens to attend to, which might
        # seem a bit unusual, but is taken from the original Transformer paper.
        attention_probs = self.dropout(attention_probs)

        # Mask heads if we want to
        if head_mask is not None:
            attention_probs = attention_probs * head_mask

        context_layer = torch.matmul(attention_probs, value_layer)

        context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
        new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
        context_layer = context_layer.view(new_context_layer_shape)

        outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)

        return outputs


class RoPEBertSdpaAttention(RoPEBertSelfAttention):

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        position_ids: Optional[torch.LongTensor] = None,
        output_attentions: Optional[bool] = False,
    ) -> Tuple[torch.Tensor]:

        bsz, q_len, _ = hidden_states.size()

        query_layer = self.transpose_for_scores(self.query(hidden_states))
        key_layer = self.transpose_for_scores(self.key(hidden_states))
        value_layer = self.transpose_for_scores(self.value(hidden_states))

        kv_seq_len = key_layer.shape[-2]
        cos, sin = self.rotary_emb(value_layer, seq_len=kv_seq_len)
        query_layer, key_layer = apply_rotary_pos_emb(query_layer, key_layer, cos, sin, position_ids)

        # SDPA with memory-efficient backend is currently (torch==2.1.2) bugged with non-contiguous inputs with custom attn_mask,
        # Reference: https://github.com/pytorch/pytorch/issues/112577.
        if query_layer.device.type == "cuda" and attention_mask is not None:
            query_layer = query_layer.contiguous()
            key_layer = key_layer.contiguous()
            value_layer = value_layer.contiguous()

        context_layer = torch.nn.functional.scaled_dot_product_attention(
            query_layer,
            key_layer,
            value_layer,
            attn_mask=attention_mask,
            dropout_p=self.config.attention_probs_dropout_prob if self.training else 0.0,
            is_causal=False
        )

        context_layer = context_layer.transpose(1, 2).contiguous()
        context_layer = context_layer.reshape(bsz, q_len, self.all_head_size)

        outputs = (context_layer,)

        return outputs


ROPEBERT_ATTENTION_CLASSES = {
    "eager": RoPEBertSelfAttention,
    "sdpa": RoPEBertSdpaAttention,
}


class RoPEBertSelfOutput(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class RoPEBertAttention(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.self = ROPEBERT_ATTENTION_CLASSES["sdpa"](config=config)
        self.output = RoPEBertSelfOutput(config)
        self.pruned_heads = set()

    def prune_heads(self, heads):
        if len(heads) == 0:
            return
        heads, index = find_pruneable_heads_and_indices(
            heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
        )

        # Prune linear layers
        self.self.query = prune_linear_layer(self.self.query, index)
        self.self.key = prune_linear_layer(self.self.key, index)
        self.self.value = prune_linear_layer(self.self.value, index)
        self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)

        # Update hyper params and store pruned heads
        self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
        self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
        self.pruned_heads = self.pruned_heads.union(heads)

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        position_ids: Optional[torch.LongTensor] = None,
        output_attentions: Optional[bool] = False,
    ) -> Tuple[torch.Tensor]:
        self_outputs = self.self(
            hidden_states,
            attention_mask,
            head_mask,
            position_ids,
            output_attentions
        )
        attention_output = self.output(self_outputs[0], hidden_states)
        outputs = (attention_output,) + self_outputs[1:]  # add attentions if we output them
        return outputs


class RoPEBertIntermediate(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
        if isinstance(config.hidden_act, str):
            self.intermediate_act_fn = ACT2FN[config.hidden_act]
        else:
            self.intermediate_act_fn = config.hidden_act

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        hidden_states = self.dense(hidden_states)
        hidden_states = self.intermediate_act_fn(hidden_states)
        return hidden_states


class RoPEBertOutput(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.dropout = nn.Dropout(config.hidden_dropout_prob)

    def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
        hidden_states = self.dense(hidden_states)
        hidden_states = self.dropout(hidden_states)
        hidden_states = self.LayerNorm(hidden_states + input_tensor)
        return hidden_states


class RoPEBertLayer(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.chunk_size_feed_forward = config.chunk_size_feed_forward
        self.seq_len_dim = 1
        self.attention = RoPEBertAttention(config)
        self.intermediate = RoPEBertIntermediate(config)
        self.output = RoPEBertOutput(config)

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        position_ids: Optional[torch.LongTensor] = None,
        output_attentions: Optional[bool] = False,
    ) -> Tuple[torch.Tensor]:
        self_attention_outputs = self.attention(
            hidden_states,
            attention_mask,
            head_mask,
            position_ids,
            output_attentions=output_attentions
        )
        attention_output = self_attention_outputs[0]
        outputs = self_attention_outputs[1:]  # add self attentions if we output attention weights

        layer_output = apply_chunking_to_forward(
            self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
        )
        outputs = (layer_output,) + outputs

        return outputs

    def feed_forward_chunk(self, attention_output):
        intermediate_output = self.intermediate(attention_output)
        layer_output = self.output(intermediate_output, attention_output)
        return layer_output


class RoPEBertEncoder(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.config = config
        self.layer = nn.ModuleList([RoPEBertLayer(config) for _ in range(config.num_hidden_layers)])
        self.gradient_checkpointing = False

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.FloatTensor] = None,
        head_mask: Optional[torch.FloatTensor] = None,
        position_ids: Optional[torch.LongTensor] = None,
        output_attentions: Optional[bool] = False,
        output_hidden_states: Optional[bool] = False,
        return_dict: Optional[bool] = True,
    ) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPooling]:
        all_hidden_states = () if output_hidden_states else None
        all_self_attentions = () if output_attentions else None

        for i, layer_module in enumerate(self.layer):
            if output_hidden_states:
                all_hidden_states = all_hidden_states + (hidden_states,)

            layer_head_mask = head_mask[i] if head_mask is not None else None

            if self.gradient_checkpointing and self.training:
                layer_outputs = self._gradient_checkpointing_func(
                    layer_module.__call__,
                    hidden_states,
                    attention_mask,
                    layer_head_mask,
                    position_ids,
                    output_attentions
                )
            else:
                layer_outputs = layer_module(
                    hidden_states,
                    attention_mask,
                    layer_head_mask,
                    position_ids,
                    output_attentions
                )

            hidden_states = layer_outputs[0]
            if output_attentions:
                all_self_attentions = all_self_attentions + (layer_outputs[1],)

        if output_hidden_states:
            all_hidden_states = all_hidden_states + (hidden_states,)

        if not return_dict:
            return tuple(
                v
                for v in [
                    hidden_states,
                    all_hidden_states,
                    all_self_attentions,
                ]
                if v is not None
            )
        return BaseModelOutputWithPooling(
            last_hidden_state=hidden_states,
            hidden_states=all_hidden_states,
            attentions=all_self_attentions,
        )


# class RoPEBertPooler(nn.Module):
#     def __init__(self, config):
#         self.pooler_type = config.pooler_type
#         super().__init__()
#
#     def forward(self, hidden_states: torch.Tensor, attention_mask: torch.LongTensor) -> torch.Tensor:
#         pass


class RoPEBertMeanTokensPooler(nn.Module):
    def __init__(self, config):
        super().__init__()

    def forward(self, hidden_states: torch.Tensor, attention_mask: torch.LongTensor) -> torch.Tensor:
        input_mask_expanded = attention_mask.unsqueeze(-1).expand(hidden_states.size()).float()
        pooled_output = torch.sum(hidden_states * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1),  min=1e-9)

        return pooled_output


class RoPEBertCLSTokenTransformPooler(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        self.activation = nn.Tanh()

    def forward(self, hidden_states: torch.Tensor, attention_mask: torch.LongTensor) -> torch.Tensor:

        first_token_tensor = hidden_states[:, 0]
        pooled_output = self.dense(first_token_tensor)
        pooled_output = self.activation(pooled_output)

        return pooled_output


ROPEBERT_POOLER_CLASSES = {
    "mean": RoPEBertMeanTokensPooler,
    "first_token_transform": RoPEBertCLSTokenTransformPooler,
}


class RoPEBertPredictionHeadTransform(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.dense = nn.Linear(config.hidden_size, config.hidden_size)
        if isinstance(config.hidden_act, str):
            self.transform_act_fn = ACT2FN[config.hidden_act]
        else:
            self.transform_act_fn = config.hidden_act
        self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        hidden_states = self.dense(hidden_states)
        hidden_states = self.transform_act_fn(hidden_states)
        hidden_states = self.LayerNorm(hidden_states)
        return hidden_states


class RoPEBertLMPredictionHead(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.transform = RoPEBertPredictionHeadTransform(config)

        # The output weights are the same as the input embeddings, but there is
        # an output-only bias for each token.
        self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)

        self.bias = nn.Parameter(torch.zeros(config.vocab_size))

        # Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
        self.decoder.bias = self.bias

    def forward(self, hidden_states):
        hidden_states = self.transform(hidden_states)
        hidden_states = self.decoder(hidden_states)
        return hidden_states


class RoPEBertOnlyMLMHead(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.predictions = RoPEBertLMPredictionHead(config)

    def forward(self, sequence_output: torch.Tensor) -> torch.Tensor:
        prediction_scores = self.predictions(sequence_output)
        return prediction_scores


class RoPEBertOnlyNSPHead(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.seq_relationship = nn.Linear(config.hidden_size, 2)

    def forward(self, pooled_output):
        seq_relationship_score = self.seq_relationship(pooled_output)
        return seq_relationship_score


class RoPEBertPreTrainingHeads(nn.Module):
    def __init__(self, config):
        super().__init__()
        self.predictions = RoPEBertLMPredictionHead(config)
        self.seq_relationship = nn.Linear(config.hidden_size, 2)

    def forward(self, sequence_output, pooled_output):
        prediction_scores = self.predictions(sequence_output)
        seq_relationship_score = self.seq_relationship(pooled_output)
        return prediction_scores, seq_relationship_score


class RoPEBertPreTrainedModel(PreTrainedModel):
    """
    An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
    models.
    """

    config_class = RoPEBertConfig
    base_model_prefix = "bert"
    supports_gradient_checkpointing = True
    _supports_sdpa = True

    def _init_weights(self, module):
        """Initialize the weights"""
        if isinstance(module, nn.Linear):
            # Slightly different from the TF version which uses truncated_normal for initialization
            # cf https://github.com/pytorch/pytorch/pull/5617
            module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
            if module.bias is not None:
                module.bias.data.zero_()
        elif isinstance(module, nn.Embedding):
            module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
            if module.padding_idx is not None:
                module.weight.data[module.padding_idx].zero_()
        elif isinstance(module, nn.LayerNorm):
            module.bias.data.zero_()
            module.weight.data.fill_(1.0)


@dataclass
class RoPEBertForPreTrainingOutput(ModelOutput):

    loss: Optional[torch.FloatTensor] = None
    prediction_logits: torch.FloatTensor = None
    seq_relationship_logits: torch.FloatTensor = None
    hidden_states: Optional[Tuple[torch.FloatTensor]] = None
    attentions: Optional[Tuple[torch.FloatTensor]] = None


class RoPEBertModel(RoPEBertPreTrainedModel):

    def __init__(self, config, add_pooling_layer=True):
        super().__init__(config)
        self.config = config

        self.embeddings = RoPEBertEmbeddings(config)
        self.encoder = RoPEBertEncoder(config)

        self.pooler = ROPEBERT_POOLER_CLASSES[config.pooler_type](config=config) if add_pooling_layer else None

        # Initialize weights and apply final processing
        self.post_init()

    def get_input_embeddings(self):
        return self.embeddings.word_embeddings

    def set_input_embeddings(self, value):
        self.embeddings.word_embeddings = value

    def _prune_heads(self, heads_to_prune):
        """
        Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
        class PreTrainedModel
        """
        for layer, heads in heads_to_prune.items():
            self.encoder.layer[layer].attention.prune_heads(heads)

    def forward(
        self,
        input_ids: Optional[torch.Tensor] = None,
        attention_mask: Optional[torch.Tensor] = None,
        token_type_ids: Optional[torch.Tensor] = None,
        position_ids: Optional[torch.Tensor] = None,
        head_mask: Optional[torch.Tensor] = None,
        inputs_embeds: Optional[torch.Tensor] = None,
        output_attentions: Optional[bool] = None,
        output_hidden_states: Optional[bool] = None,
        return_dict: Optional[bool] = None,
    ) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPooling]:

        output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
        output_hidden_states = (
            output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
        )
        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        if input_ids is not None and inputs_embeds is not None:
            raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
        elif input_ids is not None:
            self.warn_if_padding_and_no_attention_mask(input_ids, attention_mask)
            input_shape = input_ids.size()[:-1]  # modified
        elif inputs_embeds is not None:
            input_shape = inputs_embeds.size()[:-1]
        else:
            raise ValueError("You have to specify either input_ids or inputs_embeds")

        if output_attentions and self.config.attn_implementation == 'sdpa':
            logger.warning("Cant use output_attentions with sdpa attention, turning off")
            output_attentions = False

        batch_size, seq_length = input_shape
        device = input_ids.device if input_ids is not None else inputs_embeds.device

        if attention_mask is None:
            attention_mask = torch.ones((batch_size, seq_length), device=device)

        if position_ids is None:
            position_ids = torch.arange(
                0, seq_length, dtype=torch.long, device=device
            )
            position_ids = position_ids.unsqueeze(0)

        if token_type_ids is None:
            token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)

        # We can provide a self-attention mask of dimensions [batch_size, 1, from_seq_length, to_seq_length]
        # ourselves in which case we just need to make it broadcastable to all heads.
        extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)

        # Prepare head mask if needed
        # 1.0 in head_mask indicate we keep the head
        # attention_probs has shape bsz x n_heads x N x N
        # input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
        # and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
        head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)

        embedding_output = self.embeddings(
            input_ids=input_ids,
            token_type_ids=token_type_ids,
            inputs_embeds=inputs_embeds
        )
        encoder_outputs = self.encoder(
            embedding_output,
            attention_mask=extended_attention_mask,
            head_mask=head_mask,
            position_ids=position_ids,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )
        sequence_output = encoder_outputs[0]
        pooled_output = self.pooler(sequence_output, attention_mask) if self.pooler is not None else None

        if not return_dict:
            return (sequence_output, pooled_output) + encoder_outputs[1:]

        return BaseModelOutputWithPooling(
            last_hidden_state=sequence_output,
            pooler_output=pooled_output,
            hidden_states=encoder_outputs.hidden_states,
            attentions=encoder_outputs.attentions,
        )


class RoPEBertForPreTraining(RoPEBertPreTrainedModel):
    _tied_weights_keys = ["predictions.decoder.bias", "cls.predictions.decoder.weight"]

    def __init__(self, config):
        super().__init__(config)

        self.bert = RoPEBertModel(config)
        self.cls = RoPEBertPreTrainingHeads(config)

        # Initialize weights and apply final processing
        self.post_init()

    def get_output_embeddings(self):
        return self.cls.predictions.decoder

    def set_output_embeddings(self, new_embeddings):
        self.cls.predictions.decoder = new_embeddings

    def forward(
        self,
        input_ids: Optional[torch.Tensor] = None,
        attention_mask: Optional[torch.Tensor] = None,
        token_type_ids: Optional[torch.Tensor] = None,
        position_ids: Optional[torch.Tensor] = None,
        head_mask: Optional[torch.Tensor] = None,
        inputs_embeds: Optional[torch.Tensor] = None,
        labels: Optional[torch.Tensor] = None,
        next_sentence_label: Optional[torch.Tensor] = None,
        output_attentions: Optional[bool] = None,
        output_hidden_states: Optional[bool] = None,
        return_dict: Optional[bool] = None,
    ) -> Union[Tuple[torch.Tensor], RoPEBertForPreTrainingOutput]:

        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        outputs = self.bert(
            input_ids,
            attention_mask=attention_mask,
            token_type_ids=token_type_ids,
            position_ids=position_ids,
            head_mask=head_mask,
            inputs_embeds=inputs_embeds,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )

        sequence_output, pooled_output = outputs[:2]
        prediction_scores, seq_relationship_score = self.cls(sequence_output, pooled_output)

        total_loss = None
        if labels is not None and next_sentence_label is not None:
            loss_fct = CrossEntropyLoss()
            masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
            next_sentence_loss = loss_fct(seq_relationship_score.view(-1, 2), next_sentence_label.view(-1))
            total_loss = masked_lm_loss + next_sentence_loss

        if not return_dict:
            output = (prediction_scores, seq_relationship_score) + outputs[2:]
            return ((total_loss,) + output) if total_loss is not None else output

        return RoPEBertForPreTrainingOutput(
            loss=total_loss,
            prediction_logits=prediction_scores,
            seq_relationship_logits=seq_relationship_score,
            hidden_states=outputs.hidden_states,
            attentions=outputs.attentions,
        )


class DNACrossEntropy(nn.Module):
    def __init__(self, *args, **kwargs) -> None:
        super().__init__(*args, **kwargs)

    def forward(self, predictions, labels):
        # labels: (n_mask, vocab_size)
        # predicts: (n_mask, vocab_size)
        log_probs = F.log_softmax(predictions, dim=-1)
        loss = -(labels * log_probs).sum(dim=-1).mean()

        return loss


class RoPEBertForMaskedLM(RoPEBertPreTrainedModel):
    _tied_weights_keys = ["predictions.decoder.bias", "cls.predictions.decoder.weight"]

    def __init__(self, config):
        super().__init__(config)

        if config.is_decoder:
            logger.warning(
                "If you want to use `BertForMaskedLM` make sure `config.is_decoder=False` for "
                "bi-directional self-attention."
            )

        self.bert = RoPEBertModel(config, add_pooling_layer=False)
        self.cls = RoPEBertOnlyMLMHead(config)

        # Initialize weights and apply final processing
        self.post_init()

    def get_output_embeddings(self):
        return self.cls.predictions.decoder

    def set_output_embeddings(self, new_embeddings):
        self.cls.predictions.decoder = new_embeddings

    def forward(
        self,
        input_ids: Optional[torch.Tensor] = None,
        attention_mask: Optional[torch.Tensor] = None,
        token_type_ids: Optional[torch.Tensor] = None,
        position_ids: Optional[torch.Tensor] = None,
        head_mask: Optional[torch.Tensor] = None,
        inputs_embeds: Optional[torch.Tensor] = None,
        labels: Optional[torch.Tensor] = None,
        masked_indices: Optional[torch.Tensor] = None,
        output_attentions: Optional[bool] = None,
        output_hidden_states: Optional[bool] = None,
        return_dict: Optional[bool] = None,
    ) -> Union[Tuple[torch.Tensor], MaskedLMOutput]:
        r"""
        labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
            Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
            config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
            loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
        """

        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        outputs = self.bert(
            input_ids=input_ids,
            attention_mask=attention_mask,
            token_type_ids=token_type_ids,
            position_ids=position_ids,
            head_mask=head_mask,
            inputs_embeds=inputs_embeds,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )

        sequence_output = outputs[0]
        prediction_scores = self.cls(sequence_output)

        masked_lm_loss = None
        if labels is not None:
            # CrossEntropyLoss()  # -100 index = padding token
            loss_fct = DNACrossEntropy()
            masked_lm_loss = loss_fct(prediction_scores[masked_indices].view(-1, self.config.vocab_size),
                                      labels[masked_indices].view(-1, self.config.vocab_size))

        if not return_dict:
            output = (prediction_scores,) + outputs[2:]
            return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output

        return MaskedLMOutput(
            loss=masked_lm_loss,
            logits=prediction_scores,
            hidden_states=outputs.hidden_states,
            attentions=outputs.attentions,
        )

    def prepare_inputs_for_generation(self, input_ids, attention_mask=None, **model_kwargs):
        input_shape = input_ids.shape
        effective_batch_size = input_shape[0]

        #  add a dummy token
        if self.config.pad_token_id is None:
            raise ValueError("The PAD token should be defined for generation")

        attention_mask = torch.cat([attention_mask, attention_mask.new_zeros((attention_mask.shape[0], 1))], dim=-1)
        dummy_token = torch.full(
            (effective_batch_size, 1), self.config.pad_token_id, dtype=torch.long, device=input_ids.device
        )
        input_ids = torch.cat([input_ids, dummy_token], dim=1)

        return {"input_ids": input_ids, "attention_mask": attention_mask}


class RoPEBertForSequenceClassification(RoPEBertPreTrainedModel):
    def __init__(self, config):
        super().__init__(config)
        self.num_labels = config.num_labels
        self.config = config

        self.bert = RoPEBertModel(config)
        classifier_dropout = (
            config.classifier_dropout if config.classifier_dropout is not None else config.hidden_dropout_prob
        )
        self.dropout = nn.Dropout(classifier_dropout)
        self.classifier = nn.Linear(config.hidden_size, config.num_labels)

        # Initialize weights and apply final processing
        self.post_init()

    def forward(
        self,
        input_ids: Optional[torch.Tensor] = None,
        attention_mask: Optional[torch.Tensor] = None,
        token_type_ids: Optional[torch.Tensor] = None,
        position_ids: Optional[torch.Tensor] = None,
        head_mask: Optional[torch.Tensor] = None,
        inputs_embeds: Optional[torch.Tensor] = None,
        labels: Optional[torch.Tensor] = None,
        output_attentions: Optional[bool] = None,
        output_hidden_states: Optional[bool] = None,
        return_dict: Optional[bool] = None,
    ) -> Union[Tuple[torch.Tensor], SequenceClassifierOutput]:
        r"""
        labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
            Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
            config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
            `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
        """
        return_dict = return_dict if return_dict is not None else self.config.use_return_dict

        outputs = self.bert(
            input_ids,
            attention_mask=attention_mask,
            token_type_ids=token_type_ids,
            position_ids=position_ids,
            head_mask=head_mask,
            inputs_embeds=inputs_embeds,
            output_attentions=output_attentions,
            output_hidden_states=output_hidden_states,
            return_dict=return_dict,
        )

        pooled_output = outputs[1]

        pooled_output = self.dropout(pooled_output)
        logits = self.classifier(pooled_output)

        loss = None
        if labels is not None:
            if self.config.problem_type is None:
                if self.num_labels == 1:
                    self.config.problem_type = "regression"
                elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int):
                    self.config.problem_type = "single_label_classification"
                else:
                    self.config.problem_type = "multi_label_classification"

            if self.config.problem_type == "regression":
                loss_fct = MSELoss()
                if self.num_labels == 1:
                    loss = loss_fct(logits.squeeze(), labels.squeeze())
                else:
                    loss = loss_fct(logits, labels)
            elif self.config.problem_type == "single_label_classification":
                loss_fct = CrossEntropyLoss()
                loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
            elif self.config.problem_type == "multi_label_classification":
                loss_fct = BCEWithLogitsLoss()
                loss = loss_fct(logits, labels)
        if not return_dict:
            output = (logits,) + outputs[2:]
            return ((loss,) + output) if loss is not None else output

        return SequenceClassifierOutput(
            loss=loss,
            logits=logits,
            hidden_states=outputs.hidden_states,
            attentions=outputs.attentions,
        )


def test_rope_bert():
    # Configuration Parameters
    config = RoPEBertConfig(
        vocab_size=30522,  # Typical BERT vocab size
        hidden_size=768,
        num_hidden_layers=12,
        num_attention_heads=12,
        intermediate_size=3072,
        max_position_embeddings=512,
        type_vocab_size=2,
        pooler_type="mean",  # or "first_token_transform"
        rope_theta=10000.0,
        rope_scaling=None,  # or specify a scaling dict
    )

    # Initialize the Model
    model = RoPEBertForPreTraining(config)
    model.eval()  # Set to evaluation mode

    # Generate Random Inputs
    B, L = 2, 10  # Batch size and sequence length
    input_ids = torch.randint(0, config.vocab_size, (B, L))
    attention_mask = torch.ones((B, L), dtype=torch.long)

    # Forward Pass
    with torch.no_grad():
        outputs = model(input_ids=input_ids, attention_mask=attention_mask)

    # Unpack Outputs
    loss = outputs.loss
    prediction_logits = outputs.prediction_logits
    seq_relationship_logits = outputs.seq_relationship_logits

    # Print Output Shapes
    print(f"Input IDs Shape: {input_ids.shape}")  # Expected: (B, L)
    print(f"Attention Mask Shape: {attention_mask.shape}")  # Expected: (B, L)")
    print(f"Prediction Logits Shape: {prediction_logits.shape}")  # Expected: (B, L, vocab_size)
    print(f"Seq Relationship Logits Shape: {seq_relationship_logits.shape}")  # Expected: (B, 2)

    # Additionally, test RoPEBertForSequenceClassification
    classification_model = RoPEBertForSequenceClassification(config)
    classification_model.eval()

    labels = torch.randint(0, config.num_labels if hasattr(config, 'num_labels') else 2, (B,))
    with torch.no_grad():
        cls_outputs = classification_model(input_ids=input_ids, attention_mask=attention_mask, labels=labels)

    logits = cls_outputs.logits
    print(f"Classification Logits Shape: {logits.shape}")  # Expected: (B, num_labels)


def test_rope_bert_for_masked_lm():
    # Configuration Parameters
    config = RoPEBertConfig(
        vocab_size=30522,  # Typical BERT vocab size
        hidden_size=768,
        num_hidden_layers=12,
        num_attention_heads=12,
        intermediate_size=3072,
        max_position_embeddings=512,
        type_vocab_size=2,
        pooler_type="mean",  # or "first_token_transform"
        rope_theta=10000.0,
        rope_scaling=None,  # or specify a scaling dict
    )

    # Initialize the Model
    model = RoPEBertForMaskedLM(config)
    model.eval()  # Set to evaluation mode

    # Generate Random Inputs
    B, L = 2, 10  # Batch size and sequence length
    input_ids = torch.randint(0, config.vocab_size, (B, L))
    attention_mask = torch.ones((B, L), dtype=torch.long)

    # Generate Random Labels
    # For MLM, labels should have the same shape as input_ids
    # Typically, some tokens are masked, and others are set to -100 to be ignored
    # For testing, we'll randomly set some labels to -100
    labels = torch.randint(0, config.vocab_size, (B, L))
    # Randomly select 15% of the tokens to mask (as per BERT's original masking strategy)
    probability_matrix = torch.full(labels.shape, 0.15)
    masked_indices = torch.bernoulli(probability_matrix).bool()
    labels[~masked_indices] = -100  # Only compute loss on masked tokens

    # Forward Pass
    with torch.no_grad():
        outputs = model(
            input_ids=input_ids,
            attention_mask=attention_mask,
            labels=labels
        )

    # Unpack Outputs
    loss = outputs.loss
    prediction_logits = outputs.logits

    # Print Output Shapes
    print(f"Input IDs Shape: {input_ids.shape}")  # Expected: (B, L)
    print(f"Attention Mask Shape: {attention_mask.shape}")  # Expected: (B, L)
    print(f"Labels Shape: {labels.shape}")  # Expected: (B, L)
    print(f"Loss: {loss.item()}")  # Scalar loss value
    print(f"Prediction Logits Shape: {prediction_logits.shape}")  # Expected: (B, L, vocab_size)")

    # Verify the logits shape
    assert prediction_logits.shape == (B, L, config.vocab_size), \
        f"Expected logits shape {(B, L, config.vocab_size)}, but got {prediction_logits.shape}"

    print("RoPEBertForMaskedLM test passed successfully.")


if __name__ == "__main__":
    # test_rope_bert()
    test_rope_bert_for_masked_lm()