| { |
| "validate#postprocessing": { |
| "_target_": "Compose", |
| "transforms": [ |
| { |
| "_target_": "Activationsd", |
| "keys": "pred", |
| "softmax": true |
| }, |
| { |
| "_target_": "Invertd", |
| "keys": [ |
| "pred", |
| "label" |
| ], |
| "transform": "@validate#preprocessing", |
| "orig_keys": "image", |
| "meta_key_postfix": "meta_dict", |
| "nearest_interp": [ |
| true, |
| true |
| ], |
| "to_tensor": true |
| }, |
| { |
| "_target_": "AsDiscreted", |
| "keys": [ |
| "pred", |
| "label" |
| ], |
| "argmax": [ |
| true, |
| false |
| ], |
| "to_onehot": 105 |
| }, |
| { |
| "_target_": "SaveImaged", |
| "_disabled_": true, |
| "keys": "pred", |
| "meta_keys": "pred_meta_dict", |
| "output_dir": "@output_dir", |
| "resample": false, |
| "squeeze_end_dims": true |
| } |
| ] |
| }, |
| "validate#handlers": [ |
| { |
| "_target_": "CheckpointLoader", |
| "load_path": "$@ckpt_dir + '/model.pt'", |
| "load_dict": { |
| "model": "@network" |
| } |
| }, |
| { |
| "_target_": "StatsHandler", |
| "iteration_log": false |
| }, |
| { |
| "_target_": "MetricsSaver", |
| "save_dir": "@output_dir", |
| "metrics": [ |
| "val_mean_dice", |
| "val_acc" |
| ], |
| "metric_details": [ |
| "val_mean_dice" |
| ], |
| "batch_transform": "$lambda x: [xx['image'].meta for xx in x]", |
| "summary_ops": "*" |
| } |
| ], |
| "initialize": [ |
| "$setattr(torch.backends.cudnn, 'benchmark', True)" |
| ], |
| "run": [ |
| "$@validate#evaluator.run()" |
| ] |
| } |
|
|
