| from setuptools import setup, find_packages |
|
|
| setup( |
| name="geneformer", |
| version="0.1.0", |
| author="Christina Theodoris", |
| author_email="christina.theodoris@gladstone.ucsf.edu", |
| description="Geneformer is a transformer model pretrained \ |
| on a large-scale corpus of single \ |
| cell transcriptomes to enable context-aware \ |
| predictions in settings with limited data in \ |
| network biology.", |
| packages=find_packages(), |
| python_requires=">=3.10", |
| include_package_data=True, |
| install_requires=[ |
| "anndata", |
| "datasets", |
| "loompy", |
| "matplotlib", |
| "numpy", |
| "optuna", |
| "optuna-integration", |
| "packaging", |
| "pandas", |
| "peft", |
| "pyarrow", |
| "pytz", |
| "ray", |
| "scanpy", |
| "scikit-learn", |
| "scipy", |
| "seaborn", |
| "setuptools", |
| "statsmodels", |
| "tdigest", |
| "tensorboard", |
| "torch", |
| "tqdm", |
| "transformers", |
| ], |
| ) |
|
|
