ogbl-ddi_GCN_(node_embedding)/notebook.ipynb

{"nbformat":4,"nbformat_minor":0,"metadata":{"colab":{"provenance":[],"gpuType":"T4","authorship_tag":"ABX9TyOopXfx0i6KOJqPNz/JJZ/X"},"kernelspec":{"name":"python3","display_name":"Python 3"},"language_info":{"name":"python"},"accelerator":"GPU"},"cells":[{"cell_type":"code","execution_count":1,"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"Jf-FwQ_RBzkP","executionInfo":{"status":"ok","timestamp":1754209472572,"user_tz":-345,"elapsed":23012,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"b45ecdd0-c869-4ac2-b439-ce33e0e19a74"},"outputs":[{"output_type":"stream","name":"stdout","text":["--2025-08-03 08:24:09--  https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh\n","Resolving repo.anaconda.com (repo.anaconda.com)... 104.16.32.241, 104.16.191.158, 2606:4700::6810:20f1, ...\n","Connecting to repo.anaconda.com (repo.anaconda.com)|104.16.32.241|:443... connected.\n","HTTP request sent, awaiting response... 200 OK\n","Length: 160039710 (153M) [application/octet-stream]\n","Saving to: ‘Miniconda3-latest-Linux-x86_64.sh’\n","\n","Miniconda3-latest-L 100%[===================>] 152.62M   144MB/s    in 1.1s    \n","\n","2025-08-03 08:24:10 (144 MB/s) - ‘Miniconda3-latest-Linux-x86_64.sh’ saved [160039710/160039710]\n","\n","PREFIX=/usr/local\n","Unpacking payload ...\n","entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.\n","entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.\n","\n","Installing base environment...\n","\n","Preparing transaction: ...working... done\n","Executing transaction: ...working... done\n","entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior.\n","installation finished.\n","WARNING:\n","    You currently have a PYTHONPATH environment variable set. This may cause\n","    unexpected behavior when running the Python interpreter in Miniconda3.\n","    For best results, please verify that your PYTHONPATH only points to\n","    directories of packages that are compatible with the Python interpreter\n","    in Miniconda3: /usr/local\n"]}],"source":["!wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh\n","!chmod +x Miniconda3-latest-Linux-x86_64.sh\n","!bash ./Miniconda3-latest-Linux-x86_64.sh -b -f -p /usr/local"]},{"cell_type":"code","source":["import sys\n","sys.path.append('/usr/local/lib/python3.9/site-packages')"],"metadata":{"id":"_qx4CXT6CJcT","executionInfo":{"status":"ok","timestamp":1754209493739,"user_tz":-345,"elapsed":12,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}}},"execution_count":2,"outputs":[]},{"cell_type":"code","source":["!conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main\n","!conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"GYycV7SFCNz4","executionInfo":{"status":"ok","timestamp":1754209518413,"user_tz":-345,"elapsed":2321,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"1b1752d9-3da4-4b1c-8338-8f47c44e87c0"},"execution_count":3,"outputs":[{"output_type":"stream","name":"stdout","text":["accepted Terms of Service for \u001b[4;94mhttps://repo.anaconda.com/pkgs/main\u001b[0m\n","accepted Terms of Service for \u001b[4;94mhttps://repo.anaconda.com/pkgs/r\u001b[0m\n"]}]},{"cell_type":"code","source":["!conda create -n myenv python=3.8.5 -y"],"metadata":{"collapsed":true,"colab":{"base_uri":"https://localhost:8080/"},"id":"-eiAS0TGCWAQ","executionInfo":{"status":"ok","timestamp":1754209556354,"user_tz":-345,"elapsed":8359,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"2be1b1c0-e810-4e96-b76a-75c8519f3614"},"execution_count":4,"outputs":[{"output_type":"stream","name":"stdout","text":["\u001b[1;32m2\u001b[0m\u001b[1;32m channel Terms of Service accepted\u001b[0m\n","Channels:\n"," - defaults\n","Platform: linux-64\n","Collecting package metadata (repodata.json): - \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\b- \b\b\\ \b\b| \b\b/ \b\bdone\n","Solving environment: \\ \b\bdone\n","\n","## Package Plan ##\n","\n","  environment location: /usr/local/envs/myenv\n","\n","  added / updated specs:\n","    - python=3.8.5\n","\n","\n","The following packages will be downloaded:\n","\n","    package                    |            build\n","    ---------------------------|-----------------\n","    libffi-3.3                 |       he6710b0_2          50 KB\n","    ncurses-6.5                |       h7934f7d_0         1.1 MB\n","    openssl-1.1.1w             |       h7f8727e_0         3.7 MB\n","    pip-24.2                   |   py38h06a4308_0         2.2 MB\n","    python-3.8.5               |       h7579374_1        49.3 MB\n","    setuptools-75.1.0          |   py38h06a4308_0         1.7 MB\n","    wheel-0.44.0               |   py38h06a4308_0         108 KB\n","    ------------------------------------------------------------\n","                                           Total:        58.1 MB\n","\n","The following NEW packages will be INSTALLED:\n","\n","  _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main \n","  _openmp_mutex      pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu \n","  ca-certificates    pkgs/main/linux-64::ca-certificates-2025.2.25-h06a4308_0 \n","  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.40-h12ee557_0 \n","  libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_2 \n","  libgcc-ng          pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1 \n","  libgomp            pkgs/main/linux-64::libgomp-11.2.0-h1234567_1 \n","  libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1 \n","  libxcb             pkgs/main/linux-64::libxcb-1.17.0-h9b100fa_0 \n","  ncurses            pkgs/main/linux-64::ncurses-6.5-h7934f7d_0 \n","  openssl            pkgs/main/linux-64::openssl-1.1.1w-h7f8727e_0 \n","  pip                pkgs/main/linux-64::pip-24.2-py38h06a4308_0 \n","  pthread-stubs      pkgs/main/linux-64::pthread-stubs-0.3-h0ce48e5_1 \n","  python             pkgs/main/linux-64::python-3.8.5-h7579374_1 \n","  readline           pkgs/main/linux-64::readline-8.2-h5eee18b_0 \n","  setuptools         pkgs/main/linux-64::setuptools-75.1.0-py38h06a4308_0 \n","  sqlite             pkgs/main/linux-64::sqlite-3.50.2-hb25bd0a_1 \n","  tk                 pkgs/main/linux-64::tk-8.6.14-h993c535_1 \n","  wheel              pkgs/main/linux-64::wheel-0.44.0-py38h06a4308_0 \n","  xorg-libx11        pkgs/main/linux-64::xorg-libx11-1.8.12-h9b100fa_1 \n","  xorg-libxau        pkgs/main/linux-64::xorg-libxau-1.0.12-h9b100fa_0 \n","  xorg-libxdmcp      pkgs/main/linux-64::xorg-libxdmcp-1.1.5-h9b100fa_0 \n","  xorg-xorgproto     pkgs/main/linux-64::xorg-xorgproto-2024.1-h5eee18b_1 \n","  xz                 pkgs/main/linux-64::xz-5.6.4-h5eee18b_1 \n","  zlib               pkgs/main/linux-64::zlib-1.2.13-h5eee18b_1 \n","\n","\n","\n","Downloading and Extracting Packages:\n","python-3.8.5         | 49.3 MB   | :   0% 0/1 [00:00<?, ?it/s]\n","openssl-1.1.1w       | 3.7 MB    | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\n","\n","pip-24.2             | 2.2 MB    | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\u001b[A\n","\n","\n","setuptools-75.1.0    | 1.7 MB    | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","ncurses-6.5          | 1.1 MB    | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","wheel-0.44.0         | 108 KB    | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","\n","libffi-3.3           | 50 KB     | :   0% 0/1 [00:00<?, ?it/s]\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","ncurses-6.5          | 1.1 MB    | : 100% 1.0/1 [00:00<00:00, 11.46it/s]\u001b[A\u001b[A\u001b[A\u001b[A\n","python-3.8.5         | 49.3 MB   | :   2% 0.02409710180827347/1 [00:00<00:04,  4.18s/it]\n","\n","pip-24.2             | 2.2 MB    | :   7% 0.07073190948525958/1 [00:00<00:01,  1.44s/it]\u001b[A\u001b[A\n","\n","\n","setuptools-75.1.0    | 1.7 MB    | :  12% 0.12024030900097438/1 [00:00<00:00,  1.20it/s]\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","wheel-0.44.0         | 108 KB    | :  15% 0.14783134378186213/1 [00:00<00:00,  1.29it/s]\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","wheel-0.44.0         | 108 KB    | : 100% 1.0/1 [00:00<00:00,  1.29it/s]                \u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","\n","libffi-3.3           | 50 KB     | :  32% 0.3178705158799449/1 [00:00<00:00,  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1.04s/it]\n","\n","\n","\n","\n","\n","libffi-3.3           | 50 KB     | : 100% 1.0/1 [00:00<00:00,  3.40it/s]\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","\n","\n","python-3.8.5         | 49.3 MB   | :  90% 0.8998365122615803/1 [00:00<00:00,  1.29it/s]\n","\n","\n","setuptools-75.1.0    | 1.7 MB    | : 100% 1.0/1 [00:01<00:00,  1.32s/it]\u001b[A\u001b[A\u001b[A\n","\n","\n","python-3.8.5         | 49.3 MB   | : 100% 1.0/1 [00:01<00:00,  1.29it/s]               \n","\n","pip-24.2             | 2.2 MB    | : 100% 1.0/1 [00:02<00:00,  5.48it/s]\u001b[A\u001b[A\n","\n","\n","\n","ncurses-6.5          | 1.1 MB    | : 100% 1.0/1 [00:02<00:00,  2.02s/it]\u001b[A\u001b[A\u001b[A\u001b[A\n","\n","\n","\n","ncurses-6.5          | 1.1 MB    | : 100% 1.0/1 [00:02<00:00,  2.02s/it]\u001b[A\u001b[A\u001b[A\u001b[A\n","                                                                        \n","                                                                        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use\n","#\n","#     $ conda deactivate\n","\n"]}]},{"cell_type":"code","source":["!source /usr/local/bin/activate myenv && pip install numpy pandas matplotlib scipy"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"collapsed":true,"id":"8oMcAurRCbSw","executionInfo":{"status":"ok","timestamp":1754209588806,"user_tz":-345,"elapsed":22189,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"a11f60a0-9f8b-490c-b13e-d68b2c0e9230"},"execution_count":5,"outputs":[{"output_type":"stream","name":"stdout","text":["Collecting numpy\n","  Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB)\n","Collecting pandas\n","  Downloading pandas-2.0.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB)\n","Collecting matplotlib\n","  Downloading matplotlib-3.7.5-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (5.7 kB)\n","Collecting scipy\n","  Downloading 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tzdata-2025.2 zipp-3.20.2\n"]}]},{"cell_type":"code","source":["!source /usr/local/bin/activate myenv && pip install torch==1.10.0+cu102 torchvision==0.11.1+cu102 torchaudio==0.10.0+cu102 -f https://download.pytorch.org/whl/cu102/torch_stable.html"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"ROLO1xCOCkwX","executionInfo":{"status":"ok","timestamp":1754209665483,"user_tz":-345,"elapsed":59789,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"b18396a6-eb60-48df-da3b-c170de00f9b6"},"execution_count":6,"outputs":[{"output_type":"stream","name":"stdout","text":["Looking in links: https://download.pytorch.org/whl/cu102/torch_stable.html\n","Collecting torch==1.10.0+cu102\n","  Downloading https://download.pytorch.org/whl/cu102/torch-1.10.0%2Bcu102-cp38-cp38-linux_x86_64.whl (881.9 MB)\n","\u001b[2K     \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m881.9/881.9 MB\u001b[0m \u001b[31m18.8 MB/s\u001b[0m eta 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(1.24.4)\n","Requirement already satisfied: pillow!=8.3.0,>=5.3.0 in /usr/local/envs/myenv/lib/python3.8/site-packages (from torchvision==0.11.1+cu102) (10.4.0)\n","Downloading typing_extensions-4.13.2-py3-none-any.whl (45 kB)\n","Installing collected packages: typing-extensions, torch, torchvision, torchaudio\n","Successfully installed torch-1.10.0+cu102 torchaudio-0.10.0+cu102 torchvision-0.11.1+cu102 typing-extensions-4.13.2\n"]}]},{"cell_type":"code","source":["!source /usr/local/bin/activate myenv && pip install torch-scatter torch-sparse torch-cluster torch-spline-conv -f https://data.pyg.org/whl/torch-1.10.0+cu102.html\n","!source /usr/local/bin/activate myenv && pip install torch-geometric"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"QHWZlK2QC3BC","executionInfo":{"status":"ok","timestamp":1754209740389,"user_tz":-345,"elapsed":30931,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"e5a4a6b2-9f04-477c-8ca3-41f66b7d2562"},"execution_count":7,"outputs":[{"output_type":"stream","name":"stdout","text":["Looking in links: https://data.pyg.org/whl/torch-1.10.0+cu102.html\n","Collecting torch-scatter\n","  Downloading torch_scatter-2.1.2.tar.gz (108 kB)\n","  Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n","Collecting torch-sparse\n","  Downloading torch_sparse-0.6.18.tar.gz (209 kB)\n","  Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n","Collecting torch-cluster\n","  Downloading torch_cluster-1.6.3.tar.gz (54 kB)\n","  Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n","Collecting torch-spline-conv\n","  Downloading torch_spline_conv-1.2.2.tar.gz (25 kB)\n","  Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n","Requirement already satisfied: scipy in /usr/local/envs/myenv/lib/python3.8/site-packages (from torch-sparse) (1.10.1)\n","Requirement already 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\u001b[?25lerror\n","\u001b[31m  ERROR: Failed building wheel for torch-cluster\u001b[0m\u001b[31m\n","\u001b[0m\u001b[?25h  Running setup.py clean for torch-cluster\n","  \u001b[1;31merror\u001b[0m: \u001b[1msubprocess-exited-with-error\u001b[0m\n","  \n","  \u001b[31m×\u001b[0m \u001b[32mpython setup.py bdist_wheel\u001b[0m did not run successfully.\n","  \u001b[31m│\u001b[0m exit code: \u001b[1;36m1\u001b[0m\n","  \u001b[31m╰─>\u001b[0m See above for output.\n","  \n","  \u001b[1;35mnote\u001b[0m: This error originates from a subprocess, and is likely not a problem with pip.\n","  Building wheel for torch-spline-conv (setup.py) ... \u001b[?25lerror\n","\u001b[31m  ERROR: Failed building wheel for torch-spline-conv\u001b[0m\u001b[31m\n","\u001b[0m\u001b[?25h  Running setup.py clean for torch-spline-conv\n","Failed to build torch-scatter torch-sparse torch-cluster torch-spline-conv\n","\u001b[31mERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (torch-scatter, torch-sparse, torch-cluster, torch-spline-conv)\u001b[0m\u001b[31m\n","\u001b[0mCollecting torch-geometric\n","  Downloading torch_geometric-2.6.1-py3-none-any.whl.metadata (63 kB)\n","Collecting aiohttp (from torch-geometric)\n","  Downloading aiohttp-3.10.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB)\n","Collecting fsspec (from torch-geometric)\n","  Downloading fsspec-2025.3.0-py3-none-any.whl.metadata (11 kB)\n","Collecting jinja2 (from torch-geometric)\n","  Downloading jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)\n","Requirement already satisfied: numpy in /usr/local/envs/myenv/lib/python3.8/site-packages (from torch-geometric) (1.24.4)\n","Collecting psutil>=5.8.0 (from torch-geometric)\n","  Downloading psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB)\n","Requirement already satisfied: pyparsing in /usr/local/envs/myenv/lib/python3.8/site-packages 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certifi-2025.8.3 charset_normalizer-3.4.2 frozenlist-1.5.0 fsspec-2025.3.0 idna-3.10 jinja2-3.1.6 multidict-6.1.0 propcache-0.2.0 psutil-7.0.0 requests-2.32.4 torch-geometric-2.6.1 tqdm-4.67.1 urllib3-2.2.3 yarl-1.15.2\n"]}]},{"cell_type":"code","source":["!source /usr/local/bin/activate myenv && pip install \\\n","    torch-scatter==2.0.9 \\\n","    torch-sparse==0.6.12 \\\n","    torch-cluster==1.5.9 \\\n","    torch-spline-conv==1.2.1 \\\n","    -f https://data.pyg.org/whl/torch-1.10.0+cu102.html"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"s-pz6VczDOej","executionInfo":{"status":"ok","timestamp":1754209781511,"user_tz":-345,"elapsed":4132,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"0126599a-c228-4d5c-c6d2-7d6a7adcd9e7"},"execution_count":8,"outputs":[{"output_type":"stream","name":"stdout","text":["Looking in links: https://data.pyg.org/whl/torch-1.10.0+cu102.html\n","Collecting torch-scatter==2.0.9\n","  Downloading 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ogb==1.3.1"],"metadata":{"collapsed":true,"colab":{"base_uri":"https://localhost:8080/"},"id":"824chB5tDUJQ","executionInfo":{"status":"ok","timestamp":1754209805240,"user_tz":-345,"elapsed":5232,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"a715df31-304e-44c1-9c3d-137542a42947"},"execution_count":9,"outputs":[{"output_type":"stream","name":"stdout","text":["Collecting ogb==1.3.1\n","  Downloading ogb-1.3.1-py3-none-any.whl.metadata (6.1 kB)\n","Requirement already satisfied: torch>=1.6.0 in /usr/local/envs/myenv/lib/python3.8/site-packages (from ogb==1.3.1) (1.10.0+cu102)\n","Requirement already satisfied: numpy>=1.16.0 in /usr/local/envs/myenv/lib/python3.8/site-packages (from ogb==1.3.1) (1.24.4)\n","Requirement already satisfied: tqdm>=4.29.0 in /usr/local/envs/myenv/lib/python3.8/site-packages (from ogb==1.3.1) (4.67.1)\n","Collecting scikit-learn>=0.20.0 (from ogb==1.3.1)\n","  Downloading 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torch-geometric==2.0.3"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"collapsed":true,"id":"2JY2Q3mxD1uw","executionInfo":{"status":"ok","timestamp":1754209954401,"user_tz":-345,"elapsed":6138,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"a0052696-cf22-4287-c4ed-63eec23682bf"},"execution_count":14,"outputs":[{"output_type":"stream","name":"stdout","text":["Collecting torch-geometric==2.0.3\n","  Downloading torch_geometric-2.0.3.tar.gz (370 kB)\n","  Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n","Requirement already satisfied: numpy in /usr/local/envs/myenv/lib/python3.8/site-packages (from torch-geometric==2.0.3) (1.24.4)\n","Requirement already satisfied: tqdm in /usr/local/envs/myenv/lib/python3.8/site-packages (from torch-geometric==2.0.3) (4.67.1)\n","Requirement already satisfied: scipy in /usr/local/envs/myenv/lib/python3.8/site-packages (from torch-geometric==2.0.3) (1.10.1)\n","Collecting networkx (from 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ogb-1.3.6\n"]}]},{"cell_type":"code","source":["!source /usr/local/bin/activate myenv && python main_pred.py"],"metadata":{"colab":{"base_uri":"https://localhost:8080/"},"id":"F0YN8KAZDj-I","executionInfo":{"status":"ok","timestamp":1754210353500,"user_tz":-345,"elapsed":344583,"user":{"displayName":"Santosh Upreti","userId":"01961227760879466523"}},"outputId":"6098be4a-b9ea-4565-af7c-bd2ff6734d81"},"execution_count":17,"outputs":[{"output_type":"stream","name":"stdout","text":["Results will be saved in results/ogbl-ddi_20250803083331\n","Namespace(adj_hop=2, adj_neg=0.0, adj_neg_dist=10, adj_weight='same', atten_combine='plus', atten_type='Multiply', batch_num=1000, batch_size=100000, bias=True, clip_grad_norm=1.0, coalesce=True, collab_year=2010, dataset='ogbl-ddi', dense_sparse='dense', device=device(type='cuda'), dim_atten=8, dim_encoding=32, dim_hidden=None, dim_node_emb=512, dir_result='results/ogbl-ddi_20250803083331', directed=False, dropout=0.25, dropout_adj=0.0, epochs=2000, eval_epoch=1, eval_metrics='Hits@20', float=<class 'numpy.float32'>, heurisctic_batch_size=100, heurisctic_directed=False, heurisctic_reproduce=False, heurisctic_reuse=True, hitK=[20], lr=0.002, lr_mini=1e-05, mag_aa=10, mag_ja=100, mag_ra=10, max_aa=100, max_cn=100, max_degree=1000, max_dist=3, max_ja=100, max_ra=20, n_heads=1, n_layers=2, n_layers_mlp=5, neg_size=2000, negative_slope=0.2, num_workers=64, optimizer='Adam', reduce='add', residual=True, result_appendix='_20250803083331', runs=10, scheduler_gamma=0.997, shuffle=True, use_aa=False, use_cn=False, use_degree=False, use_dist=False, use_feature=False, use_ja=False, use_layer_norm=False, use_node_emb=True, use_ra=False, use_val=False, use_weight=False)\n","Processing...\n","Loading necessary files...\n","This might take a while.\n","Processing graphs...\n","100% 1/1 [00:00<00:00, 36.89it/s]\n","Converting graphs into PyG objects...\n","100% 1/1 [00:00<00:00, 7639.90it/s]\n","Saving...\n","Done!\n","remove non-shortest distance neighbors in high adjs ...\n","saving adj_degree data to dataset/ogbl_ddi/processed/adj_hop2_neg0.0.pt\n","finish loading data_pos_train\n","finish loading data_pos_valid\n","finish loading data_neg_valid\n","finish loading data_pos_test\n","finish loading data_neg_test\n","negative sampling ...\n","negative sampling finished\n","finish loading data_neg_train\n","count_parameters: 5125250\n","learning rate: 0.0020000\n",": Hits@20: Run: 00, Epoch: 00, Loss: 1.3207, Valid: 2.08%, Test: 5.42%\n","learning rate: 0.0019940\n",": Hits@20: Run: 00, Epoch: 01, Loss: 0.9629, Valid: 2.55%, Test: 5.01%\n","learning rate: 0.0019880\n",": Hits@20: Run: 00, Epoch: 02, Loss: 0.8859, Valid: 2.68%, Test: 3.65%\n","learning rate: 0.0019821\n",": Hits@20: Run: 00, Epoch: 03, Loss: 0.8582, Valid: 2.37%, Test: 4.69%\n","learning rate: 0.0019761\n",": Hits@20: Run: 00, Epoch: 04, Loss: 0.7688, Valid: 4.15%, Test: 0.65%\n","learning rate: 0.0019702\n",": Hits@20: Run: 00, Epoch: 05, Loss: 0.6922, Valid: 8.32%, Test: 7.10%\n","learning rate: 0.0019643\n",": Hits@20: Run: 00, Epoch: 06, Loss: 0.6480, Valid: 10.86%, Test: 8.48%\n","learning rate: 0.0019584\n",": Hits@20: Run: 00, Epoch: 07, Loss: 0.6239, Valid: 8.49%, Test: 8.87%\n","learning rate: 0.0019525\n",": Hits@20: Run: 00, Epoch: 08, Loss: 0.5967, Valid: 8.90%, Test: 7.96%\n","learning rate: 0.0019466\n",": Hits@20: Run: 00, Epoch: 09, Loss: 0.5580, Valid: 18.20%, Test: 13.07%\n","learning rate: 0.0019408\n",": Hits@20: Run: 00, Epoch: 10, Loss: 0.5257, Valid: 23.53%, Test: 14.64%\n","learning rate: 0.0019350\n",": Hits@20: Run: 00, Epoch: 11, Loss: 0.5200, Valid: 23.14%, Test: 14.83%\n","Traceback (most recent call last):\n","  File \"main_pred.py\", line 229, in <module>\n","    loss = train(args, predictor, optimizer, scheduler, data_pos_train, data_neg_train)\n","  File \"main_pred.py\", line 172, in train\n","    y_pos = predictor(data_pos, edge_pos)\n","  File \"/usr/local/envs/myenv/lib/python3.8/site-packages/torch/nn/modules/module.py\", line 1102, in _call_impl\n","    return forward_call(*input, **kwargs)\n","  File \"/content/GNNHE/ogbl-ddi_95.49_10runs/models.py\", line 133, in forward\n","    x = self.ComHGlayers[-1](x, adj)\n","  File \"/usr/local/envs/myenv/lib/python3.8/site-packages/torch/nn/modules/module.py\", line 1102, in _call_impl\n","    return forward_call(*input, **kwargs)\n","  File \"/content/GNNHE/ogbl-ddi_95.49_10runs/models.py\", line 246, in forward\n","    y.append(layer(x, adj))\n","  File \"/usr/local/envs/myenv/lib/python3.8/site-packages/torch/nn/modules/module.py\", line 1102, in _call_impl\n","    return forward_call(*input, **kwargs)\n","  File \"/content/GNNHE/ogbl-ddi_95.49_10runs/models.py\", line 195, in forward\n","    atten = SparseTensor_norm(atten)\n","  File \"/content/GNNHE/ogbl-ddi_95.49_10runs/models.py\", line 26, in SparseTensor_norm\n","    adj = torch_sparse.mul(adj, deg_inv.view(-1, 1))\n","  File \"/usr/local/envs/myenv/lib/python3.8/site-packages/torch_sparse/mul.py\", line 11, in mul\n","    other = gather_csr(other.squeeze(1), rowptr)\n","  File \"/usr/local/envs/myenv/lib/python3.8/site-packages/torch_scatter/segment_csr.py\", line 114, in gather_csr\n","    return torch.ops.torch_scatter.gather_csr(src, indptr, out)\n","KeyboardInterrupt\n","^C\n"]}]}]}