| # STOCKHOLM 1.0 |
| #=GF ID TB6Cs1H1 |
| #=GF AC RF01546 |
| #=GF DE Trypanosomatid snoRNA TB6Cs1H1 |
| #=GF AU Osuch I |
| #=GF GA 40.0 |
| #=GF NC 39.7 |
| #=GF TC 48.7 |
| #=GF SE Predicted; WAR; |
| #=GF SS Predicted; WAR; |
| #=GF TP Gene; snRNA; snoRNA; HACA-box; |
| #=GF BM cmbuild -F CM SEED |
| #=GF CB cmcalibrate --mpi CM |
| #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.96 -Z 2958934 CM SEQDB |
| #=GF DR SO; 0000594; H_ACA_box_snoRNA; |
| #=GF DR GO; 0006396; RNA processing; |
| #=GF DR GO; 0005730; nucleolus; |
| #=GF RN [1] |
| #=GF RM 15840815 |
| #=GF RT A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in |
| #=GF RT Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA |
| #=GF RT modification. |
| #=GF RA Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S |
| #=GF RL RNA. 2005;11:619-645. |
| #=GF WK Trypanosome_H/ACA_box_snoRNAs |
| #=GF SQ 6 |
|
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| AAHK01012838.1/375-440 CGGCCAGCGAAAACACAGGCGCCGUG-CUUGC-AACGAUCACUUCGCCUGCACCUGUGCUGCCCCAGA |
| AC013353.9/110996-110931 AGGCUAGCGAAAACACAGGCGUUUUG-CUUAC-GUCAAUCACUGCGUCUGCACCUGUGCUACCCGAGA |
| AAHK01012125.1/639-574 CGGCCAGCGAAAACACAGGCGCCGUG-CUUGC-AACGAUCACCUCGCCUGCACCUGUGCUGCCCCAGA |
| FR796458.1/633590-633657 AGGUCAGCGAAAACACAGUCGAAGUGGUAUUGACCCCGUCAUUUCGCCUGCACCUGUGCUGUCCGAGA |
| FR799579.1/612347-612414 AGGUCAGCGAAAACACAGUCGAAGCGGUAUUGACCCCGUCAUUUCGCCUGCACCUGUGCUGUCCGAGA |
| HE575319.1/404948-404883 AGGUCAGCGAAAACACAGGCGUUUUG-UUUAC-AUGGGUCACUGCGUCUGCACCUGUGCUGUCCGAGA |
| #=GC SS_cons :<<-<<<<<------<<<<<<<--<<._____.______>>-->>>>>>>------>>>>>->>:::: |
| #=GC RF aGGuCAGCGAAAACACAGgCGcuguG.uuUac.auCgaUCacUgCGcCUGCACCUGUGCUGuCCgAGA |
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