Datasets:
| # STOCKHOLM 1.0 | |
| #=GF ID snoR86 | |
| #=GF AC RF00303 | |
| #=GF DE Small nucleolar RNA snoR86 | |
| #=GF AU Moxon SJ; 0000-0003-4644-1816 | |
| #=GF GA 40.0 | |
| #=GF NC 39.7 | |
| #=GF TC 40.0 | |
| #=GF SE Moxon SJ, INFERNAL | |
| #=GF SS Predicted; PFOLD; Moxon SJ | |
| #=GF TP Gene; snRNA; snoRNA; HACA-box; | |
| #=GF BM cmbuild -F CM SEED | |
| #=GF CB cmcalibrate --mpi CM | |
| #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.67 -Z 2958934 CM SEQDB | |
| #=GF DR SO; 0000594; H_ACA_box_snoRNA; | |
| #=GF DR GO; 0006396; RNA processing; | |
| #=GF DR GO; 0005730; nucleolus; | |
| #=GF DR snoopy; Arabidopsis_thaliana300124; | |
| #=GF DR snoopy; Arabidopsis_thaliana300207; | |
| #=GF RN [1] | |
| #=GF RM 12007400 | |
| #=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse | |
| #=GF RT cellular functions. | |
| #=GF RA Kiss T | |
| #=GF RL Cell 2002;109:145-148. | |
| #=GF RN [2] | |
| #=GF RM 12477388 | |
| #=GF RT Experimental RNomics: identification of 140 candidates for small | |
| #=GF RT non-messenger RNAs in the plant Arabidopsis thaliana. | |
| #=GF RA Marker C, Zemann A, Terhorst T, Kiefmann M, Kastenmayer JP, Green P, | |
| #=GF RA Bachellerie JP, Brosius J, Huttenhofer A | |
| #=GF RL Curr Biol 2002;12:2002-2013. | |
| #=GF CC snoR86 is a member of the H/ACA class of small nucleolar RNAs (snoRNAs) | |
| #=GF CC which act as guides in the the modification of uridines to pseudouridines | |
| #=GF CC [1]. | |
| #=GF WK Small_nucleolar_RNA_snoR86 | |
| #=GF SQ 11 | |
| AL138659.1/77819-77696 GAGCAAUGACGUCAAAAU---AA----AAAUGGC-GUAAGUUGCCUUGAAGGUUGGCAACAACAAAUA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUAAUCUUGAUUGUU----GGCCUCGAACAAGUCGCUACAUU | |
| AJ505659.1/1-124 GAGCAAUGACGUCAAAAU---AA----AAAUGGC-GUAAGUUGCCUUGAAGGUUGGCAACAACAAAUA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUAAUCUUGAUUGUU----GGCCUCGAACAAGUCGCUACAUU | |
| AARH01007754.1/2159-2040 GAGCAAGGGUGUC--------GA----AAAUGGC-ACAACUUGCAUUGAAGGUUGGCAA-UACUAAUA--------GCAAUUCUCCGUGCCUAUCAAAUCUUGAUUUCAUUUUGAUU--AUGGCCUCGAACAAGUUGCUACAUU | |
| AASG02009944.1/1753-1868 GAGCAAAUGCGUC--------GA----AAAUGGC-GAAAUUUGCAUUGAAGGUUGGCAAUAUCAA-UA--------GCAAUUCUCCGUGCCUAUUAAAUCGAUCAUUUUGA--UUAU----GGCCUCGAACAAGUUGCAACAGU | |
| AACV01024246.1/8981-8858 GAGCAAAGGGGCC--AGA---UG----CAGUGGC-UAUCUUUGCAUUGAAGGUUGGCGACAACGAACAAAC-----GCAGUUCUCCGUGCCGCUCAGAUUUUCUCUGUUUUGUG-AC----GGCCUCGAACAAGCUGCUACAUC | |
| AARH01010162.1/241821-241954 GAGCAAGGACGUCAAGAA---AAAAG-AGAUGGC-GUGAUUUGCAUUGAAGGUUGGCUAUAUCAAUGAUAAAAUUGGCGAUUCUCCGUGCCUGUCAAAUCUGUUCAUUUUGAUC-AU----GGCCUCGAACAAGUCGCUACAAA | |
| AL731740.4/7530-7650 GAGCAAAGGGGCC--UGA---UA----AAGUGGC-GAUCUUUGGAUUGAAGGUUGGCGACAACGA-UU--------GCAGUUCUCCGUGCCGCUCAGAUUUUCCUCUCUUUUGUGAC----GGCCUCGAACAAGCUGCUACAUC | |
| AC007767.3/47035-47162 GAGCAAGGGCGUC-UAGU---UU----AAAUGAC-GUGAGUUGCCUUGAAGGUUGGCGAUAACAAGUUUU------GCGAUUCUCCGUGCCUAUCAAAUUUUGUUUUUCGUAUUGAU-AAUGGCCUCGAACAAGUCGCUACAUU | |
| AASG02009944.1/2138-2259 GAGCAAGAGUGUC--------UA----AAAUGACUACAACUUGCAUUGAAGGU-GGCCA-UAUCAAUA--------GCAAUUCUCCGUGCCUAUCAAAUCUCUUAAUUUCAUUUUGAUUAUGGCCUCGAACAAGUUGCUACAUU | |
| AM448130.2/819-690 GAGCAAAGGCGUCGAAUA---AAAGAGAAAUGAC-GCAAUUUGCCUUGAAGGUUGGCGAUAAGGAAAAAUG-----GCGAUUCUCCGUGCCUGUCAAUCAUUUUUAUUUUGAUC-AU----GGCCUCGAACAAGUCGCUACAUU | |
| AC189297.2/132599-132725 GAGCAAUGACGUCAAAAUAUAAA----AAAUGGC-GUGAGUUGCCUUGAAGGUUGGCAAUAACAAUAA--------GCGAUUCUCCGUGCCUAUCAAGUUUUCUUUAUACUGAUUGC----GGCCUCGAACAAGUCGCUACAUU | |
| #=GC SS_cons ::::::::<<<<<.____...__....____>>>.>>:::<<<<<_________>>>>>:::::::::........<<<<<<------<<<__________________________....>>>-------->>>>>>:::::: | |
| #=GC RF GAGCAAaGgcGcC.aaaa...aA....AAAUGgC.gcaAuUuGCcUUGAAGGUUgGCaAuAAcaAauA........GCgauUCUCCGUGCCuaUCAAaUuUuuuuuUuuuuauuuau....GGCCUCGAACAAgucGCUACAUu | |
| // | |