Datasets:
| # STOCKHOLM 1.0 | |
| #=GF ID snoZ105 | |
| #=GF AC RF00145 | |
| #=GF DE Small nucleolar RNA Z105 | |
| #=GF AU Wilkinson AC; 0000-0001-7406-0151 | |
| #=GF GA 45.0 | |
| #=GF NC 44.9 | |
| #=GF TC 45.0 | |
| #=GF PI snoR7 | |
| #=GF SE Predicted; CMfinder | |
| #=GF SS Predicted; CMfinder | |
| #=GF TP Gene; snRNA; snoRNA; CD-box; | |
| #=GF BM cmbuild -F CM SEED | |
| #=GF CB cmcalibrate --mpi CM | |
| #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.34 -Z 2958934 CM SEQDB | |
| #=GF DR URL; http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/home; | |
| #=GF DR SO; 0000593; C_D_box_snoRNA; | |
| #=GF DR GO; 0006396; RNA processing; | |
| #=GF DR GO; 0005730; nucleolus; | |
| #=GF RN [1] | |
| #=GF RM 12736310 | |
| #=GF RT The high diversity of snoRNAs in plants: identification and comparative | |
| #=GF RT study of 120 snoRNA genes from Oryza sativa. | |
| #=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH | |
| #=GF RL Nucleic Acids Res 2003;31:2601-2613. | |
| #=GF RN [2] | |
| #=GF RM 12007400 | |
| #=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse | |
| #=GF RT cellular functions. | |
| #=GF RA Kiss T | |
| #=GF RL Cell 2002;109:145-148. | |
| #=GF CC This family consists of several snoRNA Z105 sequences which are members of | |
| #=GF CC the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box | |
| #=GF CC motifs. This family seems to be found exclusively in plants. C/D box small | |
| #=GF CC nucleolar RNAs are known to act as a methylation guides for 18S ribosomal | |
| #=GF CC RNA [1]. | |
| #=GF WK Small_nucleolar_RNA_Z105 | |
| #=GF SQ 11 | |
| AAAA02011125.1/45898-45831 UUGGCAUGAUGAGGAA----ACCUUACGUUUAU--CUGAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA | |
| AJ489950.1/1-67 UUGGCAUGAUGAGGAA----AACCGAUGUUUUUG---GAUCUAUUUGAUGAUA--AAUU-CCUCCUACUCAUUCUGA | |
| AC189189.1/52925-52858 AAGGCAUGAUGAGGAU-----UGUUU-AUUGUCAUCUGAUUUUC-UGA--UGAAUCAAUACCUCCUACUCAUUCUGA | |
| AL049862.1/41945-41876 AAGGCAUGAUGAGGAU-----UGUUUUAUUGUCAUCUGAUUCUCAUGA--UGAAUAUAUACCUCCUACUCAUUCUGA | |
| AARH01002622.1/16153-16085 AGGCAAUAAUGAUGAA-----AGAUUUAA-AUUAUCUUAUAUGUAUGA--UGAUUCAACACCUCCUACUCAUUCUGA | |
| AC193778.1/40019-39952 GCAUAAUGAUGAUGCA---------AAAUUUGUUCCGAUUAUUCAUGAAUGGAAUACCAACCUCCUACUCAUUCUGA | |
| AP006540.1/42483-42559 CUGGCAUGAUGAUGAUAAUUACGAUUGAUUUUGUAUGAUUAUUCAUAUGAUUAAUACAAUCCUCCUACUCAUUCUGA | |
| AASG02002047.1/5497-5426 GCAUAGUGAUGAUGAA-----CUUGAAAUUUCCCGAUGAUUUUCAUGACAGGAAUAACAACCUCCUACUCAUACUGA | |
| ABCN01006793.1/11445-11379 -UGGCU--AUGAGGAA-------ACACCUGUCUGAUCAUUUGAACUGAUGAGACCAAUCACCUCCUACUCAUUCUGA | |
| FN596742.1/723319-723247 UUGGUAUGAUGAUGAAC---AUAACA-AUUAUUUUCUGAUGAUUCUUGAUUGAAUAAUAACCUCCUACUCAUUCUGA | |
| AP003829.2/81303-81234 UUGGCAUGAUGAGGAA----AUCAAUCGUUUCUAACUGAUCCACUGGAUGAGA--AAUU-CCUCCUACUCAUUCUGA | |
| #=GC SS_cons :::::<<<<-------.....----------<<--<__________>---->>--------------->>>>::::: | |
| #=GC RF uuGGcAUGAUGAuGAA.....ugauauAUUUucaucUgAUuUucaUgAugugaAUAAuuACCUCCUACUCAUUCUGA | |
| // | |