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reframe-hpc/reframe
reframe-hpc__reframe-3433
b7d86b1d777bc3bed7a3d71d95130376ab5d2820
diff --git a/reframe/utility/sanity.py b/reframe/utility/sanity.py index a4f57a301..1228586ff 100644 --- a/reframe/utility/sanity.py +++ b/reframe/utility/sanity.py @@ -8,6 +8,7 @@ import contextlib import glob as pyglob import itertools +import math import os import re import sys @@ -576,8 +577,14 @@ def calc_bo...
diff --git a/unittests/test_sanity_functions.py b/unittests/test_sanity_functions.py index 7e6368938..0e9367027 100644 --- a/unittests/test_sanity_functions.py +++ b/unittests/test_sanity_functions.py @@ -473,6 +473,18 @@ def test_assert_reference(): r'\(l=-1\.2, u=-0\.9\)'): sn.e...
Performance threshold goes to -inf when it should be zero. In attempting to create a performance test where zero is the correct value, I created the following reference (since a value of zero results in no reference check being performed; see https://github.com/reframe-hpc/reframe/issues/2857): ``` self.refere...
@vkarak: Related to #2857.@vkarak: > This works for me in that values of zero pass, and 1 or greater values fail, but what is unexpected is that the lower bound gets set to -inf: Indeed this is a bug. These checks should check against `None`: https://github.com/reframe-hpc/reframe/blob/b7d86b1d777bc3bed7a3d71d9513037...
2025-03-18T08:54:38Z
2025-03-18T08:54:38Z
0.3.88
[]
[ "unittests/test_sanity_functions.py::test_assert_ge_with_deferrables", "unittests/test_sanity_functions.py::test_assert_in", "unittests/test_sanity_functions.py::test_count_uniq", "unittests/test_sanity_functions.py::test_assert_false_with_deferrables", "unittests/test_sanity_functions.py::test_assert_not_i...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json unittests/test_sanity_functions.py", "issue_number": 3430, "merge_commit": "20fed5da1569a4962bed12510a89f53083aea3ef", "merged_at": "", "pr_number": 3433, "score": { "complexity": -1, "task_correctness": -1, "tes...
3,000
600
pytest --json-report --json-report-file=report_pytest.json unittests/test_sanity_functions.py
tobymao/sqlglot
tobymao__sqlglot-4837
08eb7f2032957c2fe3119963f344538b90d8f631
diff --git a/sqlglot/parser.py b/sqlglot/parser.py index 24bf1492f7..f5ed3a8923 100644 --- a/sqlglot/parser.py +++ b/sqlglot/parser.py @@ -1291,6 +1291,10 @@ class Parser(metaclass=_Parser): "SIMPLE", ), "INITIALLY": ("DEFERRED", "IMMEDIATE"), + "USING": ( + "BTREE", + ...
diff --git a/tests/dialects/test_mysql.py b/tests/dialects/test_mysql.py index 06638f16c5..4a28176ccf 100644 --- a/tests/dialects/test_mysql.py +++ b/tests/dialects/test_mysql.py @@ -83,6 +83,12 @@ def test_ddl(self): self.validate_identity( "CREATE OR REPLACE VIEW my_view AS SELECT column1 AS `bo...
MySQL dialect fails to parse PRIMARY KEY USING BTREE syntax **Before you file an issue** - Make sure you specify the "read" dialect eg. `parse_one(sql, read="spark")` - Make sure you specify the "write" dialect eg. `ast.sql(dialect="duckdb")` - Check if the issue still exists on main yes, the issue still exists. I'v tr...
@Gohoy: ```python sql = "CREATE TABLE test_table ( id INT AUTO_INCREMENT, alarm_category VARCHAR ( 255 ), alarm_rule VARCHAR ( 255 ), PRIMARY KEY(id) USING BTREE )" sqlglot.parse_one(sql,read='mysql') # result # sqlglot.errors.ParseError: Expecting ). Line 1, Col: 130. # id INT AUTO_INCREMENT, alarm_category VARCHA...
2025-03-05T15:49:35Z
2025-03-05T15:49:35Z
0.3.88
[]
[ "tests/dialects/test_mysql.py::TestMySQL::test_show_like_or_where", "tests/dialects/test_mysql.py::TestMySQL::test_identity", "tests/dialects/test_mysql.py::TestMySQL::test_string_literals", "tests/dialects/test_mysql.py::TestMySQL::test_show_columns", "tests/dialects/test_mysql.py::TestMySQL::test_types", ...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_mysql.py", "issue_number": 4833, "merge_commit": "adf2fef27dc341508c3b9c710da0f835277094a1", "merged_at": "", "pr_number": 4837, "score": { "complexity": -1, "task_correctness": -1, "test_comp...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_mysql.py
matchms/matchms
matchms__matchms-809
0b1707bd866f56404e4056df678af12a4bc20141
diff --git a/matchms/importing/load_from_msp.py b/matchms/importing/load_from_msp.py index cf7726a4..47dbedcc 100644 --- a/matchms/importing/load_from_msp.py +++ b/matchms/importing/load_from_msp.py @@ -109,7 +109,7 @@ def _parse_line_with_peaks(rline: str) -> Tuple[List[float], List[float], str]: def get_peak_value...
diff --git a/tests/importing/test_load_from_msp.py b/tests/importing/test_load_from_msp.py index 891ac002..839b604c 100644 --- a/tests/importing/test_load_from_msp.py +++ b/tests/importing/test_load_from_msp.py @@ -2,7 +2,7 @@ import os import numpy as np import pytest from matchms import Spectrum -from matchms.impo...
matchms fails when reading spectra where abundance is in scientific notation Example spectrum - spotted in the MSDial EI RI library. Funny thing is our regex only handles lower case `e` notation while this uses upper case. Makes me think if we shouldn't just leave the parsing of stuff to python and try to just identi...
2025-06-13T09:27:11Z
2025-06-13T09:27:11Z
0.4.3
[]
[ "tests/importing/test_load_from_msp.py::test_load_from_msp_diverse_spectrum_collection", "tests/importing/test_load_from_msp.py::test_load_from_msp_spaces_massbank_1", "tests/importing/test_load_from_msp.py::test_parse_metadata[comments: SMILES=\"CC(O)C(O)=O\"-expected_output1]", "tests/importing/test_load_fr...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/importing/test_load_from_msp.py", "issue_number": 802, "merge_commit": "f54285408f4f6e702545871c126161120106e076", "merged_at": "", "pr_number": 809, "score": { "complexity": -1, "task_correctness": -1, "te...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/importing/test_load_from_msp.py
DataDog/guarddog
DataDog__guarddog-523
4d8b7972885ce111991af01610b24b326dcc1de8
diff --git a/guarddog/analyzer/metadata/bundled_binary.py b/guarddog/analyzer/metadata/bundled_binary.py index 5b6e875..81ed040 100644 --- a/guarddog/analyzer/metadata/bundled_binary.py +++ b/guarddog/analyzer/metadata/bundled_binary.py @@ -14,7 +14,12 @@ class BundledBinary(Detector): # magic bytes are the firs...
diff --git a/tests/analyzer/metadata/test_bundled_binary.py b/tests/analyzer/metadata/test_bundled_binary.py index 07f1845..7a01283 100644 --- a/tests/analyzer/metadata/test_bundled_binary.py +++ b/tests/analyzer/metadata/test_bundled_binary.py @@ -19,6 +19,8 @@ class TestBundleBinary: binary_sample_elf = ( ...
Add Mach-O magic bytes to the bundled binary detector The [bundled binary detector](https://github.com/DataDog/guarddog/blob/v2.1.0/guarddog/analyzer/metadata/bundled_binary.py#L17) currently detects **ELF** (Unix) and **exe** (Windows) files, but it does not account for the magic bytes for **Mach-O** (Mac) files. This...
@ocku: Let me know if I can work on this :)@sobregosodd: Hello @ocku , the case you point out seems valid as well Please, send the PR well look into it. Thanks again!@ocku: ^ Created. Sorry for the delay! I had some issues with GitHub.
2025-01-22T12:07:10Z
2025-01-22T12:07:10Z
0.4.3
[]
[ "tests/analyzer/metadata/test_bundled_binary.py::TestBundleBinary::test_plain[detector1]", "tests/analyzer/metadata/test_bundled_binary.py::TestBundleBinary::test_empty[detector1]", "tests/analyzer/metadata/test_bundled_binary.py::TestBundleBinary::test_macho64[detector0]", "tests/analyzer/metadata/test_bundl...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/analyzer/metadata/test_bundled_binary.py", "issue_number": 498, "merge_commit": "4ddb8c8b437c070dc86f17824b7690b5cd4385fe", "merged_at": "", "pr_number": 523, "score": { "complexity": -1, "task_correctness": -1...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/analyzer/metadata/test_bundled_binary.py
mitmproxy/pdoc
mitmproxy__pdoc-806
ea2b69a4162226b07f68cd25d92d4d92dbbafaf8
diff --git a/CHANGELOG.md b/CHANGELOG.md index 747d22f..3337d33 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ## Unreleased: pdoc next +- Include included HTML headers in the ToC by default by enabling markdown2's `mixed=True` option of the `header-ids` extra + (#806, @mrossinek) ## 2025-04-21: ...
diff --git a/test/test_render_helpers.py b/test/test_render_helpers.py index c17740f..4279725 100644 --- a/test/test_render_helpers.py +++ b/test/test_render_helpers.py @@ -110,6 +110,22 @@ def test_markdown_toc(): assert to_html("#foo\n#bar").toc_html # type: ignore +def test_mixed_toc(): + """ + markd...
Include HTML headers in ToC #### Problem Description When a docstring includes HTML headers (`<h1>`, etc.) for example when I used an `.. include:: some_file.html` (or some markdown file which mixes markdown and HTML headers for some reason) directive, those headers are not included in the table of contents. #### Pro...
@mhils: Sure, please send a PR!@mrossinek: > Sure, please send a PR! Happy to do so! How should I approach this? 1. Should I simply enable mixed header-ids by default? E.g. through `"header-ids": {"mixed": True}` here: https://github.com/mitmproxy/pdoc/blob/ea2b69a4162226b07f68cd25d92d4d92dbbafaf8/pdoc/render_helpers....
2025-05-04T12:43:09Z
2025-05-04T12:43:09Z
0.4.3
[]
[ "test/test_render_helpers.py::test_markdown_autolink[See https://www.python.org.-<p>See <a href=\"https://www.python.org\">https://www.python.org</a>.</p>\\n]", "test/test_render_helpers.py::test_qualname_candidates[foo-candidates1]", "test/test_render_helpers.py::test_relative_link[foo.bar-foo.bar.baz-bar/baz....
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json test/test_render_helpers.py", "issue_number": 805, "merge_commit": "2ab4df12693678439a9063f0e3909c26545241a9", "merged_at": "", "pr_number": 806, "score": { "complexity": -1, "task_correctness": -1, "test_complet...
3,000
600
pytest --json-report --json-report-file=report_pytest.json test/test_render_helpers.py
tobymao/sqlglot
tobymao__sqlglot-4618
cfa25bb59b4537427aebe93f92c7176e045e7b0c
diff --git a/sqlglot/parser.py b/sqlglot/parser.py index 7f310b3b58..ae3f6cde66 100644 --- a/sqlglot/parser.py +++ b/sqlglot/parser.py @@ -5902,7 +5902,7 @@ def _parse_foreign_key(self) -> exp.ForeignKey: ) def _parse_primary_key_part(self) -> t.Optional[exp.Expression]: - return self._parse_fiel...
diff --git a/tests/dialects/test_tsql.py b/tests/dialects/test_tsql.py index 738120a2ee..fe1aa9c5dd 100644 --- a/tests/dialects/test_tsql.py +++ b/tests/dialects/test_tsql.py @@ -436,6 +436,13 @@ def test_tsql(self): "'a' + 'b'", ) + self.validate_identity( + "CREATE TABLE db.t...
TSQL: PRIMARY KEY constraint fails to parse if sort option is given The following CREATE TABLE statement parses just fine: ``` import sqlglot test = """CREATE TABLE dbo.test ( id INT, name VARCHAR(50), CONSTRAINT pk_testTable PRIMARY KEY (id) ) ;""" parsed_script = sqlglo...
@cchambers-rdi: Added version to OP.
2025-01-15T15:34:32Z
2025-01-15T15:34:32Z
0.3.88
[]
[ "tests/dialects/test_tsql.py::TestTSQL::test_rollback", "tests/dialects/test_tsql.py::TestTSQL::test_declare", "tests/dialects/test_tsql.py::TestTSQL::test_datetrunc", "tests/dialects/test_tsql.py::TestTSQL::test_transaction", "tests/dialects/test_tsql.py::TestTSQL::test_eomonth", "tests/dialects/test_tsq...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_tsql.py", "issue_number": 4610, "merge_commit": "14474ee689025cc67b1f9a07e51d2f414ec5ab49", "merged_at": "", "pr_number": 4618, "score": { "complexity": -1, "task_correctness": -1, "test_compl...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_tsql.py
MolSSI/QCElemental
MolSSI__QCElemental-350
cddc5313ad7a251501b633f119c2cb566885bcc1
diff --git a/.github/workflows/CI.yaml b/.github/workflows/CI.yaml index aa949f3..8aca4c9 100644 --- a/.github/workflows/CI.yaml +++ b/.github/workflows/CI.yaml @@ -17,7 +17,8 @@ jobs: matrix: python-version: ["3.7", "3.9", "3.11", "3.12"] pydantic-version: ["1", "2"] - runs-on: [ubuntu-...
diff --git a/qcelemental/tests/test_molecule.py b/qcelemental/tests/test_molecule.py index 46d7ced..b2154c0 100644 --- a/qcelemental/tests/test_molecule.py +++ b/qcelemental/tests/test_molecule.py @@ -2,6 +2,7 @@ Tests the imports and exports of the Molecule object. """ + import numpy as np import pytest @@ -79...
Floating point number allowed for molecular charge but not molecular multiplicity **Describe the bug** <!-- A clear and concise description of what the bug is. --> QCElemental allows floating point numbers for molecular charges, however when computing the spin with the fractional electron there is no way to represent...
@loriab: I'll make sure to bring this up to @bennybp to see if the database is ready for a type change.
2025-01-13T16:47:19Z
2025-01-13T16:47:19Z
0.4.3
[ "qcelemental/tests/test_molparse_validate_and_fill_chgmult.py::test_validate_and_fill_chgmult_mol_model[inp50-expected50-]", "qcelemental/tests/test_molecule.py::test_show", "qcelemental/tests/test_molecule.py::test_molecule_serialization[msgpack]", "qcelemental/tests/test_molecule.py::test_to_from_file_charg...
[ "qcelemental/tests/test_molparse_validate_and_fill_chgmult.py::test_validate_and_fill_chgmult_mol_model[inp3-expected3-bfdcbd63]", "qcelemental/tests/test_molecule.py::test_fragment_charge_configurations[0-4-0-2-0.0-5]", "qcelemental/tests/test_molecule.py::test_pretty_print", "qcelemental/tests/test_molparse...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json qcelemental/tests/test_molparse_validate_and_fill_chgmult.py qcelemental/tests/test_molecule.py", "issue_number": 317, "merge_commit": "1908ccc4228544f7c5dd02be7b660f2fc4e73ade", "merged_at": "", "pr_number": 350, "score": {...
3,000
600
pytest --json-report --json-report-file=report_pytest.json qcelemental/tests/test_molparse_validate_and_fill_chgmult.py qcelemental/tests/test_molecule.py
PyCQA/pyflakes
PyCQA__pyflakes-831
433dfd001746a69d12597f7c97af78c13e1f662e
diff --git a/pyflakes/checker.py b/pyflakes/checker.py index c7d3e882..9888d7ac 100644 --- a/pyflakes/checker.py +++ b/pyflakes/checker.py @@ -1008,8 +1008,12 @@ def addBinding(self, node, value): for scope in reversed(self.scopeStack) if not isinstance(scope, GeneratorScope) ...
diff --git a/pyflakes/test/test_other.py b/pyflakes/test/test_other.py index 68c38e95..23990820 100644 --- a/pyflakes/test/test_other.py +++ b/pyflakes/test/test_other.py @@ -1744,6 +1744,13 @@ def test_assign_expr(self): print(x) ''') + def test_assign_expr_after_annotation(self): + self....
Walrus operator + annotation can cause F821 in version 3.3.0 In order to type hint a variable used in a walrus expression, I put the type hint outside of the expression like in the following example (test.py): ``` a: int if a := 3: print(a) print(a) ``` Variable "a" is defined in both places ``` $ python3 test....
@sigmavirus24: Thanks for reporting and fixing!
2025-03-30T21:54:34Z
2025-03-30T21:54:34Z
0.3.88
[ "pyflakes/test/test_other.py::TestUnusedAssignment::test_unusedReassignedVariable", "pyflakes/test/test_other.py::Test::test_doubleAssignment" ]
[ "pyflakes/test/test_other.py::TestStringFormatting::test_invalid_percent_format_calls", "pyflakes/test/test_other.py::TestUnusedAssignment::test_unusedVariable", "pyflakes/test/test_other.py::TestUnusedAssignment::test_exceptionUnusedInExceptInFunction", "pyflakes/test/test_other.py::TestAsyncStatements::test...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json pyflakes/test/test_other.py", "issue_number": 830, "merge_commit": "87051d20e2f5054302f1a5785c6b5a2c83a39cba", "merged_at": "", "pr_number": 831, "score": { "complexity": -1, "task_correctness": -1, "test_complet...
3,000
600
pytest --json-report --json-report-file=report_pytest.json pyflakes/test/test_other.py
tobymao/sqlglot
tobymao__sqlglot-5015
06db2350a1c625cc30212912a73267127fc4f3ea
diff --git a/sqlglot/dialects/postgres.py b/sqlglot/dialects/postgres.py index 97589d5fbd..61a6dba438 100644 --- a/sqlglot/dialects/postgres.py +++ b/sqlglot/dialects/postgres.py @@ -742,3 +742,12 @@ def isascii_sql(self, expression: exp.IsAscii) -> str: @unsupported_args("this") def currentschema_sql...
diff --git a/tests/dialects/test_postgres.py b/tests/dialects/test_postgres.py index 957eb9d5b9..c732688e55 100644 --- a/tests/dialects/test_postgres.py +++ b/tests/dialects/test_postgres.py @@ -372,6 +372,14 @@ def test_postgres(self): pretty=True, ) + self.validate_all( + "SE...
[BUG] Conversion from SQL Server's DATEADD(quarter...) to PostgreSQL not working properly ## Type of issue: Bug Report Conversion from SQL Server's DATEADD(quarter...) to PostgreSQL not working properly ## Description When trying to convert SQL on read dialect 'tsql' for SQL Server's DATEADD(quarter...) the conversion...
2025-04-25T21:40:11Z
2025-04-25T21:40:11Z
0.3.88
[]
[ "tests/dialects/test_postgres.py::TestPostgres::test_array_length", "tests/dialects/test_postgres.py::TestPostgres::test_bool_or", "tests/dialects/test_postgres.py::TestPostgres::test_json_extract", "tests/dialects/test_postgres.py::TestPostgres::test_xmlelement", "tests/dialects/test_postgres.py::TestPostg...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_postgres.py", "issue_number": 5013, "merge_commit": "60103020879db5f23a6c4a1775848e31cce13415", "merged_at": "", "pr_number": 5015, "score": { "complexity": -1, "task_correctness": -1, "test_c...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/dialects/test_postgres.py
matthewwithanm/python-markdownify
matthewwithanm__python-markdownify-217
e29de4e75314daf9267f30f47fd7a091ef5f1deb
diff --git a/markdownify/__init__.py b/markdownify/__init__.py index 780761c..a43f3a7 100644 --- a/markdownify/__init__.py +++ b/markdownify/__init__.py @@ -650,6 +650,9 @@ def convert_pre(self, el, text, parent_tags): return '\n\n```%s\n%s\n```\n\n' % (code_language, text) + def convert_q(self, el, tex...
diff --git a/tests/test_conversions.py b/tests/test_conversions.py index 27951ee..6145411 100644 --- a/tests/test_conversions.py +++ b/tests/test_conversions.py @@ -305,6 +305,11 @@ def test_pre(): assert md("<p>foo</p>\n<pre>bar</pre>\n</p>baz</p>", sub_symbol="^") == "\n\nfoo\n\n```\nbar\n```\n\nbaz" +def te...
Inline Quotation element ignored Html that looks like this: ```html Here is <q>A Quote</q> from someone. ``` should be rendered as: ``` Here is “A Quote“ from someone. ``` https://developer.mozilla.org/en-US/docs/Web/HTML/Reference/Elements/q Solution: ```python def convert_q(self, el, text, parent_tags): ret...
@chrispy-snps: @colinrobinsonuib - good catch! We should probably use straight ASCII quotes for wider compatibility with downstream flows. Are you interested in opening a pull request and officially becoming a contributor?@colinrobinsonuib: Sure https://github.com/matthewwithanm/python-markdownify/pull/217
2025-04-28T10:37:33Z
2025-04-28T10:37:33Z
0.3.88
[]
[ "tests/test_conversions.py::test_kbd", "tests/test_conversions.py::test_hn_atx_headings", "tests/test_conversions.py::test_b", "tests/test_conversions.py::test_code", "tests/test_conversions.py::test_hn_atx_closed_headings", "tests/test_conversions.py::test_a_spaces", "tests/test_conversions.py::test_bl...
pip install -e .; pip install pytest pytest-json-report;
pytest --json-report --json-report-file=report_pytest.json
python:3.11
{ "command_test_small": "pytest --json-report --json-report-file=report_pytest.json tests/test_conversions.py", "issue_number": 216, "merge_commit": "0e1a849346f24e9b15eefb11752feaf7b4b821fa", "merged_at": "", "pr_number": 217, "score": { "complexity": -1, "task_correctness": -1, "test_completen...
3,000
600
pytest --json-report --json-report-file=report_pytest.json tests/test_conversions.py