| SMART Protocols Ontology: Workflow Module (SP-Workflow) |
| ======================================================================================================================== |
|
|
| Overview |
| -------- |
| SP-Workflow module represents: i) the executable elements of a protocol; ii) the experimental actions |
| and material entities that participates in instructions (sample/specimen, organisms, reagents, |
| instruments); and iii) the order of execution of the instructions. |
|
|
| :Domain: Scholarly Knowledge |
| :Category: Workflows |
| :Current Version: 4.0 |
| :Last Updated: 2013-07-01 |
| :Creator: http://oxgiraldo.wordpress.com |
| :License: Creative Commons Attribution 4.0 International (CC BY 4.0) |
| :Format: OWL |
| :Download: `SMART Protocols Ontology: Workflow Module (SP-Workflow) Homepage <https://github.com/SMARTProtocols/SMART-Protocols>`_ |
|
|
| Graph Metrics |
| ------------- |
| - **Total Nodes**: 1446 |
| - **Total Edges**: 3017 |
| - **Root Nodes**: 4 |
| - **Leaf Nodes**: 834 |
|
|
| Knowledge coverage |
| ------------------ |
| - Classes: 419 |
| - Individuals: 5 |
| - Properties: 17 |
|
|
| Hierarchical metrics |
| -------------------- |
| - **Maximum Depth**: 13 |
| - **Minimum Depth**: 0 |
| - **Average Depth**: 7.23 |
| - **Depth Variance**: 8.19 |
|
|
| Breadth metrics |
| ------------------ |
| - **Maximum Breadth**: 36 |
| - **Minimum Breadth**: 3 |
| - **Average Breadth**: 14.07 |
| - **Breadth Variance**: 120.78 |
|
|
| Dataset Statistics |
| ------------------ |
| Generated Benchmarks: |
| - **Term Types**: 5 |
| - **Taxonomic Relations**: 577 |
| - **Non-taxonomic Relations**: 22 |
| - **Average Terms per Type**: 1.00 |
|
|
| Usage Example |
| ------------- |
| .. code-block:: python |
|
|
| from ontolearner.ontology import SPWorkflow |
|
|
| # Initialize and load ontology |
| ontology = SPWorkflow() |
| ontology.load("path/to/ontology.OWL") |
|
|
| # Extract datasets |
| data = ontology.extract() |
|
|
| # Access specific relations |
| term_types = data.term_typings |
| taxonomic_relations = data.type_taxonomies |
| non_taxonomic_relations = data.type_non_taxonomic_relations |
|
|
