File size: 1,191 Bytes
0161e74 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | [build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "arc-stack"
version = "0.1.2"
description = "Stack is a single-cell foundation model that enables in-context learning at inference time."
readme = "README.md"
license = { file = "LICENSE" }
authors = [
{ name = "Mingze Dong", email = "mingze.dong@arcinstitute.org" },
{ name = "Yusuf Roohani", email = "yusuf.roohani@arcinstitute.org" },
]
requires-python = ">=3.9"
dependencies = [
"anndata>=0.9",
"h5py>=3.8",
"geomloss>=0.2.6",
"numpy>=1.22",
"pandas>=1.5",
"psutil>=5.9",
"pytorch-lightning>=2.1",
"PyYAML>=6.0",
"scipy>=1.8",
"scvi-tools>=1.0",
"torch>=2.0",
"wandb>=0.15",
]
[project.urls]
Homepage = "https://github.com/ArcInstitute/stack"
Source = "https://github.com/ArcInstitute/stack"
[project.scripts]
stack-train = "stack.cli.launch_training:main"
stack-finetune = "stack.cli.launch_finetuning:main"
stack-embedding = "stack.cli.embedding:main"
stack-generation = "stack.cli.generation:main"
[tool.setuptools]
package-dir = {"" = "src"}
[tool.setuptools.packages.find]
where = ["src"]
include = ["stack*"]
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