| name: sc |
| channels: |
| - conda-forge |
| dependencies: |
| - _libgcc_mutex=0.1 |
| - _openmp_mutex=4.5 |
| - asttokens=3.0.0 |
| - bzip2=1.0.8 |
| - ca-certificates=2025.8.3 |
| - comm=0.2.3 |
| - decorator=5.2.1 |
| - exceptiongroup=1.3.0 |
| - executing=2.2.0 |
| - importlib-metadata=8.7.0 |
| - ipykernel=6.30.1 |
| - ipython=9.4.0 |
| - ipython_pygments_lexers=1.1.1 |
| - jedi=0.19.2 |
| - jupyter_client=8.6.3 |
| - jupyter_core=5.8.1 |
| - keyutils=1.6.1 |
| - krb5=1.21.3 |
| - ld_impl_linux-64=2.44 |
| - libedit=3.1.20250104 |
| - libexpat=2.7.1 |
| - libffi=3.4.6 |
| - libgcc=15.1.0 |
| - libgcc-ng=15.1.0 |
| - libgomp=15.1.0 |
| - liblzma=5.8.1 |
| - libnsl=2.0.1 |
| - libsodium=1.0.20 |
| - libsqlite=3.50.4 |
| - libstdcxx=15.1.0 |
| - libstdcxx-ng=15.1.0 |
| - libuuid=2.38.1 |
| - libxcrypt=4.4.36 |
| - libzlib=1.3.1 |
| - matplotlib-inline=0.1.7 |
| - ncurses=6.5 |
| - nest-asyncio=1.6.0 |
| - openssl=3.5.2 |
| - packaging=25.0 |
| - parso=0.8.4 |
| - pexpect=4.9.0 |
| - pickleshare=0.7.5 |
| - pip=25.2 |
| - platformdirs=4.3.8 |
| - prompt-toolkit=3.0.51 |
| - ptyprocess=0.7.0 |
| - pure_eval=0.2.3 |
| - pygments=2.19.2 |
| - python=3.11.13 |
| - python-dateutil=2.9.0.post0 |
| - python_abi=3.11 |
| - readline=8.2 |
| - setuptools=80.9.0 |
| - six=1.17.0 |
| - stack_data=0.6.3 |
| - tk=8.6.13 |
| - traitlets=5.14.3 |
| - typing_extensions=4.14.1 |
| - wcwidth=0.2.13 |
| - wheel=0.45.1 |
| - zeromq=4.3.5 |
| - zipp=3.23.0 |
| - pip: |
| - absl-py==2.3.1 |
| - accelerate==1.9.0 |
| - adjusttext==1.3.0 |
| - adpbulk==0.1.4 |
| - aiofiles==24.1.0 |
| - aiohappyeyeballs==2.6.1 |
| - aiohttp==3.12.15 |
| - aiosignal==1.4.0 |
| - anndata==0.12.1 |
| - antlr4-python3-runtime==4.9.3 |
| - anyio==4.10.0 |
| - argon2-cffi==25.1.0 |
| - argon2-cffi-bindings==25.1.0 |
| - array-api-compat==1.12.0 |
| - arrow==1.3.0 |
| - arviz==0.22.0 |
| - async-lru==2.0.5 |
| - attrs==25.3.0 |
| - babel==2.17.0 |
| - beautifulsoup4==4.13.4 |
| - bleach==6.2.0 |
| - blitzgsea==1.3.54 |
| - cached-property==2.0.1 |
| - cell-eval==0.5.42 |
| - cell-gears==0.1.2 |
| - certifi==2025.8.3 |
| - cffi==1.17.1 |
| - charset-normalizer==3.4.2 |
| - chex==0.1.90 |
| - click==8.2.1 |
| - contourpy==1.3.3 |
| - cpa==0.4.1 |
| - crc32c==2.7.1 |
| - cycler==0.12.1 |
| - datasets==2.21.0 |
| - dcor==0.6 |
| - debugpy==1.8.15 |
| - defusedxml==0.7.1 |
| - deprecated==1.2.18 |
| - dill==0.3.8 |
| - docrep==0.3.2 |
| - docstring-parser==0.17.0 |
| - donfig==0.8.1.post1 |
| - einops==0.8.1 |
| - equinox==0.13.0 |
| - et-xmlfile==2.0.0 |
| - etils==1.13.0 |
| - fast-array-utils==1.2.1 |
| - fastjsonschema==2.21.1 |
| - filelock==3.18.0 |
| - flax==0.11.0 |
| - fonttools==4.59.0 |
| - formulaic==1.2.0 |
| - formulaic-contrasts==1.0.0 |
| - fqdn==1.5.1 |
| - frozenlist==1.7.0 |
| - fsspec==2024.6.1 |
| - grpcio==1.74.0 |
| - h11==0.16.0 |
| - h5netcdf==1.6.3 |
| - h5py==3.14.0 |
| - hf-xet==1.1.5 |
| - httpcore==1.0.9 |
| - httpx==0.28.1 |
| - huggingface-hub==0.34.3 |
| - humanize==4.12.3 |
| - idna==3.10 |
| - igraph==0.11.9 |
| - importlib-resources==6.5.2 |
| - iniconfig==2.1.0 |
| - interface-meta==1.3.0 |
| - ipywidgets==8.1.7 |
| - isoduration==20.11.0 |
| - jax==0.6.2 |
| - jaxlib==0.6.2 |
| - jaxopt==0.8.5 |
| - jaxtyping==0.3.2 |
| - jinja2==3.1.6 |
| - joblib==1.5.1 |
| - json5==0.12.0 |
| - jsonpointer==3.0.0 |
| - jsonschema==4.25.0 |
| - jsonschema-specifications==2025.4.1 |
| - jupyter==1.1.1 |
| - jupyter-console==6.6.3 |
| - jupyter-events==0.12.0 |
| - jupyter-lsp==2.2.6 |
| - jupyter-server==2.16.0 |
| - jupyter-server-terminals==0.5.3 |
| - jupyterlab==4.4.5 |
| - jupyterlab-pygments==0.3.0 |
| - jupyterlab-server==2.27.3 |
| - jupyterlab-widgets==3.0.15 |
| - kiwisolver==1.4.8 |
| - lamin-utils==0.15.0 |
| - lark==1.2.2 |
| - legacy-api-wrap==1.4.1 |
| - leidenalg==0.10.2 |
| - lightning==2.5.2 |
| - lightning-utilities==0.15.0 |
| - lineax==0.0.8 |
| - llvmlite==0.44.0 |
| - markdown==3.8.2 |
| - markdown-it-py==3.0.0 |
| - markupsafe==3.0.2 |
| - matplotlib==3.10.5 |
| - mdurl==0.1.2 |
| - mistune==3.1.3 |
| - ml-collections==1.1.0 |
| - ml-dtypes==0.5.3 |
| - mpmath==1.3.0 |
| - msgpack==1.1.1 |
| - mudata==0.3.2 |
| - multidict==6.6.3 |
| - multipledispatch==1.0.0 |
| - multiprocess==0.70.16 |
| - narwhals==2.0.1 |
| - natsort==8.4.0 |
| - nbclient==0.10.2 |
| - nbconvert==7.16.6 |
| - nbformat==5.10.4 |
| - networkx==3.5 |
| - notebook==7.4.5 |
| - notebook-shim==0.2.4 |
| - numba==0.61.2 |
| - numcodecs==0.16.1 |
| - numpy==2.2.6 |
| - numpyro==0.18.0 |
| - nvidia-cublas-cu12==12.6.4.1 |
| - nvidia-cuda-cupti-cu12==12.6.80 |
| - nvidia-cuda-nvrtc-cu12==12.6.77 |
| - nvidia-cuda-runtime-cu12==12.6.77 |
| - nvidia-cudnn-cu12==9.5.1.17 |
| - nvidia-cufft-cu12==11.3.0.4 |
| - nvidia-cufile-cu12==1.11.1.6 |
| - nvidia-curand-cu12==10.3.7.77 |
| - nvidia-cusolver-cu12==11.7.1.2 |
| - nvidia-cusparse-cu12==12.5.4.2 |
| - nvidia-cusparselt-cu12==0.6.3 |
| - nvidia-nccl-cu12==2.26.2 |
| - nvidia-nvjitlink-cu12==12.6.85 |
| - nvidia-nvtx-cu12==12.6.77 |
| - omegaconf==2.3.0 |
| - openpyxl==3.1.5 |
| - opt-einsum==3.4.0 |
| - optax==0.2.5 |
| - orbax==0.1.7 |
| - orbax-checkpoint==0.11.20 |
| - ott-jax==0.5.1 |
| - overrides==7.7.0 |
| - pandas==2.3.1 |
| - pandocfilters==1.5.1 |
| - patsy==1.0.1 |
| - pdex==0.1.21 |
| - pertpy==1.0.1 |
| - pillow==11.3.0 |
| - pluggy==1.6.0 |
| - ply==3.11 |
| - polars==1.32.0 |
| - pot==0.9.5 |
| - prometheus-client==0.22.1 |
| - propcache==0.3.2 |
| - protobuf==6.31.1 |
| - psutil==7.0.0 |
| - pubchempy==1.0.4 |
| - pyarrow==21.0.0 |
| - pycparser==2.22 |
| - pydeseq2==0.5.2 |
| - pydot==4.0.1 |
| - pynndescent==0.5.13 |
| - pyomo==6.9.2 |
| - pyparsing==3.2.3 |
| - pyro-api==0.1.2 |
| - pyro-ppl==1.9.1 |
| - pytest==8.4.1 |
| - python-json-logger==3.3.0 |
| - pytorch-lightning==1.9.5 |
| - pytz==2025.2 |
| - pyyaml==6.0.2 |
| - pyzmq==27.0.1 |
| - rdkit==2025.3.5 |
| - referencing==0.36.2 |
| - requests==2.32.4 |
| - rfc3339-validator==0.1.4 |
| - rfc3986-validator==0.1.1 |
| - rfc3987-syntax==1.1.0 |
| - rich==14.1.0 |
| - rpds-py==0.26.0 |
| - safetensors==0.5.3 |
| - scanpy==1.11.4 |
| - scgpt==0.2.4 |
| - scib==1.1.7 |
| - scikit-learn==1.7.1 |
| - scikit-misc==0.5.1 |
| - scipy==1.16.1 |
| - scvi-tools==0.20.3 |
| - seaborn==0.13.2 |
| - send2trash==1.8.3 |
| - session-info==1.0.1 |
| - session-info2==0.2 |
| - shtab==1.7.2 |
| - simplejson==3.20.1 |
| - sniffio==1.3.1 |
| - soupsieve==2.7 |
| - sparse==0.17.0 |
| - sparsecca==0.3.1 |
| - statsmodels==0.14.5 |
| - stdlib-list==0.11.1 |
| - sympy==1.14.0 |
| - tensorboard==2.20.0 |
| - tensorboard-data-server==0.7.2 |
| - tensorstore==0.1.76 |
| - terminado==0.18.1 |
| - texttable==1.7.0 |
| - threadpoolctl==3.6.0 |
| - timm==1.0.19 |
| - tinycss2==1.4.0 |
| - tomlkit==0.13.3 |
| - toolz==1.0.0 |
| - torch==2.7.1 |
| - torch-geometric==2.6.1 |
| - torchaudio==2.7.1 |
| - torchdiffeq==0.2.5 |
| - torchinfo==1.8.0 |
| - torchmetrics==1.8.0 |
| - torchtext==0.18.0 |
| - torchvision==0.22.1 |
| - tornado==6.5.1 |
| - tqdm==4.67.1 |
| - treescope==0.1.9 |
| - triton==3.3.1 |
| - typeguard==4.4.4 |
| - types-python-dateutil==2.9.0.20250708 |
| - tyro==0.9.27 |
| - tzdata==2025.2 |
| - umap-learn==0.5.9.post2 |
| - uri-template==1.3.0 |
| - urllib3==2.5.0 |
| - wadler-lindig==0.1.7 |
| - webcolors==24.11.1 |
| - webencodings==0.5.1 |
| - websocket-client==1.8.0 |
| - werkzeug==3.1.3 |
| - widgetsnbextension==4.0.14 |
| - wrapt==1.17.2 |
| - xarray==2025.7.1 |
| - xarray-einstats==0.9.1 |
| - xxhash==3.5.0 |
| - yarl==1.20.1 |
| - zarr==3.1.1 |
| prefix: /opt/conda/envs/sc |
|
|
