LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
configs/finetuning/ft_parsecg.yaml
configs/training/bc_large.yaml
src/arc_stack.egg-info/PKG-INFO
src/arc_stack.egg-info/SOURCES.txt
src/arc_stack.egg-info/dependency_links.txt
src/arc_stack.egg-info/entry_points.txt
src/arc_stack.egg-info/requires.txt
src/arc_stack.egg-info/top_level.txt
src/stack/cli_utils.py
src/stack/dataloader.py
src/stack/finetuning_dataloader.py
src/stack/model.py
src/stack/model_finetune.py
src/stack/model_loading.py
src/stack/cli/__init__.py
src/stack/cli/embedding.py
src/stack/cli/generation.py
src/stack/cli/launch_finetuning.py
src/stack/cli/launch_training.py
src/stack/data/__init__.py
src/stack/data/datasets.py
src/stack/data/gene_processing.py
src/stack/data/h5_manager.py
src/stack/data/hvg.py
src/stack/data/finetuning/__init__.py
src/stack/data/finetuning/datasets.py
src/stack/data/training/__init__.py
src/stack/data/training/datasets.py
src/stack/finetune/__init__.py
src/stack/finetune/datamodule.py
src/stack/finetune/datasets.py
src/stack/finetune/lightning.py
src/stack/finetune/utils.py
src/stack/models/__init__.py
src/stack/models/utils.py
src/stack/models/core/__init__.py
src/stack/models/core/base.py
src/stack/models/core/inference.py
src/stack/models/core/losses.py
src/stack/models/finetune/__init__.py
src/stack/models/finetune/mixins.py
src/stack/models/finetune/model.py
src/stack/modules/__init__.py
src/stack/modules/attention.py
src/stack/modules/regularizers.py
src/stack/training/__init__.py
src/stack/training/datamodule.py
src/stack/training/lightning.py
src/stack/training/utils.py
tests/test_cli_help.py
tests/test_cli_smoke_runs.py
tests/test_cli_utils.py
tests/test_finetune_mixins.py
tests/test_model_core.py
tests/test_model_loading_import.py