#!/bin/bash #PJM -L rscgrp=b-batch #PJM -L gpu=1 #PJM -L elapse=04:00:00 #PJM -N eval_dim1_145k #PJM -j #PJM -o /home/hp250092/ku50001222/qian/aivc/lfj/GRN/result/evl/eval_dim1_145k_%j.out module load cuda/12.2.2 module load cudnn/8.9.7 module load gcc-toolset/12 source /home/hp250092/ku50001222/qian/aivc/lfj/stack_env/bin/activate cd /home/hp250092/ku50001222/qian/aivc/lfj/GRN/dim1_ablation export PYTORCH_CUDA_ALLOC_CONF=max_split_size_mb:256 CKPT=/home/hp250092/ku50001222/qian/aivc/lfj/GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/iteration_145000/checkpoint.pt OUT_DIR=/home/hp250092/ku50001222/qian/aivc/lfj/GRN/result/evl/dim1_ablation_145k echo "==========================================" echo "Job ID: $PJM_JOBID" echo "Job Name: $PJM_JOBNAME" echo "Start: $(date)" echo "Node: $(hostname)" echo "GPU: $(nvidia-smi --query-gpu=name,memory.total --format=csv,noheader 2>/dev/null || echo 'N/A')" echo "Checkpoint: $CKPT" echo "Output: $OUT_DIR" echo "==========================================" accelerate launch --num_processes=1 run_dim1.py \ --data-name norman \ --d-model 512 \ --d-hid 2048 \ --nhead 8 \ --nlayers 4 \ --batch-size 48 \ --lr 5e-5 \ --steps 50000 \ --fusion-method differential_perceiver \ --perturbation-function crisper \ --noise-type Gaussian \ --infer-top-gene 1000 \ --n-top-genes 5000 \ --use-mmd-loss \ --gamma 0.5 \ --split-method additive \ --fold 1 \ --scgpt-dim 1 \ --bottleneck-dim 512 \ --latent-weight 1.0 \ --choose-latent-p 0.4 \ --dh-depth 2 \ --print-every 5000 \ --topk 30 \ --use-negative-edge \ --ema-decay 0.9999 \ --t-sample-mode logit_normal \ --t-expr-mean 0.0 \ --t-expr-std 1.0 \ --t-latent-mean 0.0 \ --t-latent-std 1.0 \ --warmup-steps 2000 \ --ode-method rk4 \ --feature-mode attention_delta \ --attn-layer 11 \ --attn-use-rank-norm \ --result-path /home/hp250092/ku50001222/qian/aivc/lfj/GRN/result/dim1_ablation \ --checkpoint-path "$CKPT" \ --test-only # Copy results to evl directory EVAL_DIR=/home/hp250092/ku50001222/qian/aivc/lfj/GRN/result/dim1_ablation/grn-norman-f1-topk30-negTrue-d512-lr5e-05-lw1.0-lp0.4-ema0.9999-ln-wu2000-rk4-online-attn_L11/eval_only mkdir -p "$OUT_DIR" if [ -f "${EVAL_DIR}/agg_results.csv" ]; then cp "${EVAL_DIR}/agg_results.csv" "$OUT_DIR/" cp "${EVAL_DIR}/results.csv" "$OUT_DIR/" 2>/dev/null cp "${EVAL_DIR}/pred.h5ad" "$OUT_DIR/" 2>/dev/null cp "${EVAL_DIR}/real.h5ad" "$OUT_DIR/" 2>/dev/null echo "[DONE] Results copied to $OUT_DIR" ls -lh "$OUT_DIR" else echo "[WARN] No agg_results.csv produced in $EVAL_DIR" fi echo "==========================================" echo "Finished: $(date)" echo "=========================================="