| :github_url: https://github.com/Project-MONAI/MONAI |
|
|
| .. _transform_api: |
|
|
| Transforms |
| ========== |
|
|
| Generic Interfaces |
| ------------------ |
| .. automodule:: monai.transforms |
| .. currentmodule:: monai.transforms |
|
|
| `Transform` |
| ^^^^^^^^^^^ |
| .. autoclass:: Transform |
| :members: |
| :special-members: __call__ |
|
|
| `MapTransform` |
| ^^^^^^^^^^^^^^ |
| .. autoclass:: MapTransform |
| :members: |
| :special-members: __call__ |
|
|
| `Randomizable` |
| ^^^^^^^^^^^^^^ |
| .. autoclass:: Randomizable |
| :members: |
|
|
| `Compose` |
| ^^^^^^^^^ |
| .. autoclass:: Compose |
| :members: |
| :special-members: __call__ |
|
|
| Vanilla Transforms |
| ------------------ |
|
|
| Crop and Pad |
| ^^^^^^^^^^^^ |
|
|
| `SpatialPad` |
| """""""""""" |
| .. autoclass:: SpatialPad |
| :members: |
| :special-members: __call__ |
|
|
| `BorderPad` |
| """"""""""" |
| .. autoclass:: BorderPad |
| :members: |
| :special-members: __call__ |
| |
| `DivisiblePad` |
| """""""""""""" |
| .. autoclass:: DivisiblePad |
| :members: |
| :special-members: __call__ |
| |
| `SpatialCrop` |
| """"""""""""" |
| .. autoclass:: SpatialCrop |
| :members: |
| :special-members: __call__ |
| |
| `CenterSpatialCrop` |
| """"""""""""""""""" |
| .. autoclass:: CenterSpatialCrop |
| :members: |
| :special-members: __call__ |
| |
| `RandSpatialCrop` |
| """"""""""""""""" |
| .. autoclass:: RandSpatialCrop |
| :members: |
| :special-members: __call__ |
|
|
| `RandSpatialCropSamples` |
| """""""""""""""""""""""" |
| .. autoclass:: RandSpatialCropSamples |
| :members: |
| :special-members: __call__ |
|
|
| `CropForeground` |
| """""""""""""""" |
| .. autoclass:: CropForeground |
| :members: |
| :special-members: __call__ |
| |
| `RandCropByPosNegLabel` |
| """"""""""""""""""""""" |
| .. autoclass:: RandCropByPosNegLabel |
| :members: |
| :special-members: __call__ |
|
|
| Intensity |
| ^^^^^^^^^ |
|
|
| `RandGaussianNoise` |
| """"""""""""""""""" |
| .. autoclass:: RandGaussianNoise |
| :members: |
| :special-members: __call__ |
| |
| `ShiftIntensity` |
| """""""""""""""" |
| .. autoclass:: ShiftIntensity |
| :members: |
| :special-members: __call__ |
| |
| `RandShiftIntensity` |
| """""""""""""""""""" |
| .. autoclass:: RandShiftIntensity |
| :members: |
| :special-members: __call__ |
| |
| `ScaleIntensity` |
| """""""""""""""" |
| .. autoclass:: ScaleIntensity |
| :members: |
| :special-members: __call__ |
| |
| `RandScaleIntensity` |
| """""""""""""""""""" |
| .. autoclass:: RandScaleIntensity |
| :members: |
| :special-members: __call__ |
| |
| `NormalizeIntensity` |
| """""""""""""""""""" |
| .. autoclass:: NormalizeIntensity |
| :members: |
| :special-members: __call__ |
| |
| `ThresholdIntensity` |
| """""""""""""""""""" |
| .. autoclass:: ThresholdIntensity |
| :members: |
| :special-members: __call__ |
| |
| `ScaleIntensityRange` |
| """"""""""""""""""""" |
| .. autoclass:: ScaleIntensityRange |
| :members: |
| :special-members: __call__ |
|
|
| `ScaleIntensityRangePercentiles` |
| """""""""""""""""""""""""""""""" |
| .. autoclass:: ScaleIntensityRangePercentiles |
| :members: |
| :special-members: __call__ |
|
|
| `AdjustContrast` |
| """""""""""""""" |
| .. autoclass:: AdjustContrast |
| :members: |
| :special-members: __call__ |
| |
| `RandAdjustContrast` |
| """""""""""""""""""" |
| .. autoclass:: RandAdjustContrast |
| :members: |
| :special-members: __call__ |
| |
| `MaskIntensity` |
| """"""""""""""" |
| .. autoclass:: MaskIntensity |
| :members: |
| :special-members: __call__ |
|
|
| `GaussianSmooth` |
| """""""""""""""" |
| .. autoclass:: GaussianSmooth |
| :members: |
| :special-members: __call__ |
| |
| `RandGaussianSmooth` |
| """""""""""""""""""" |
| .. autoclass:: RandGaussianSmooth |
| :members: |
| :special-members: __call__ |
| |
| `GaussianSharpen` |
| """"""""""""""""" |
| .. autoclass:: GaussianSharpen |
| :members: |
| :special-members: __call__ |
|
|
| `RandGaussianSharpen` |
| """"""""""""""""""""" |
| .. autoclass:: RandGaussianSharpen |
| :members: |
| :special-members: __call__ |
| |
| IO |
| ^^ |
| |
| `LoadImage` |
| """"""""""" |
| .. autoclass:: LoadImage |
| :members: |
| :special-members: __call__ |
|
|
| `LoadNifti` |
| """"""""""" |
| .. autoclass:: LoadNifti |
| :members: |
| :special-members: __call__ |
| |
| `LoadPNG` |
| """"""""" |
| .. autoclass:: LoadPNG |
| :members: |
| :special-members: __call__ |
|
|
| `LoadNumpy` |
| """"""""""" |
| .. autoclass:: LoadNumpy |
| :members: |
| :special-members: __call__ |
| |
| Post-processing |
| ^^^^^^^^^^^^^^^ |
| |
| `SplitChannel` |
| """""""""""""" |
| .. autoclass:: SplitChannel |
| :members: |
| :special-members: __call__ |
| |
| `Activations` |
| """"""""""""" |
| .. autoclass:: Activations |
| :members: |
| :special-members: __call__ |
| |
| `AsDiscrete` |
| """""""""""" |
| .. autoclass:: AsDiscrete |
| :members: |
| :special-members: __call__ |
| |
| `KeepLargestConnectedComponent` |
| """"""""""""""""""""""""""""""" |
| .. autoclass:: KeepLargestConnectedComponent |
| :members: |
| :special-members: __call__ |
| |
| `LabelToContour` |
| """""""""""""""" |
| .. autoclass:: LabelToContour |
| :members: |
| :special-members: __call__ |
| |
| `MeanEnsemble` |
| """""""""""""" |
| .. autoclass:: MeanEnsemble |
| :members: |
| :special-members: __call__ |
| |
| `VoteEnsemble` |
| """""""""""""" |
| .. autoclass:: VoteEnsemble |
| :members: |
| :special-members: __call__ |
| |
| Spatial |
| ^^^^^^^ |
| |
| `Spacing` |
| """"""""" |
| .. autoclass:: Spacing |
| :members: |
| :special-members: __call__ |
|
|
| `Orientation` |
| """"""""""""" |
| .. autoclass:: Orientation |
| :members: |
| :special-members: __call__ |
| |
| `RandRotate` |
| """""""""""" |
| .. autoclass:: RandRotate |
| :members: |
| :special-members: __call__ |
| |
| `RandFlip` |
| """""""""" |
| .. autoclass:: RandFlip |
| :members: |
| :special-members: __call__ |
| |
| `RandZoom` |
| """""""""" |
| .. autoclass:: RandZoom |
| :members: |
| :special-members: __call__ |
| |
| `Affine` |
| """""""" |
| .. autoclass:: Affine |
| :members: |
| :special-members: __call__ |
| |
| `Resample` |
| """""""""" |
| .. autoclass:: Resample |
| :members: |
| :special-members: __call__ |
| |
| `RandAffine` |
| """""""""""" |
| .. autoclass:: RandAffine |
| :members: |
| :special-members: __call__ |
| |
| `RandDeformGrid` |
| """""""""""""""" |
| .. autoclass:: RandDeformGrid |
| :members: |
| :special-members: __call__ |
| |
| `AffineGrid` |
| """""""""""""""" |
| .. autoclass:: AffineGrid |
| :members: |
| :special-members: __call__ |
| |
| `RandAffineGrid` |
| """""""""""""""" |
| .. autoclass:: RandAffineGrid |
| :members: |
| :special-members: __call__ |
| |
| `Rand2DElastic` |
| """"""""""""""" |
| .. autoclass:: Rand2DElastic |
| :members: |
| :special-members: __call__ |
|
|
| `Rand3DElastic` |
| """"""""""""""" |
| .. autoclass:: Rand3DElastic |
| :members: |
| :special-members: __call__ |
| |
| `Rotate90` |
| """""""""" |
| .. autoclass:: Rotate90 |
| :members: |
| :special-members: __call__ |
| |
| `RandRotate90` |
| """""""""""""" |
| .. autoclass:: RandRotate90 |
| :members: |
| :special-members: __call__ |
| |
| `Flip` |
| """""" |
| .. autoclass:: Flip |
| :members: |
| :special-members: __call__ |
| |
| `Resize` |
| """""""" |
| .. autoclass:: Resize |
| :members: |
| :special-members: __call__ |
| |
| `Rotate` |
| """""""" |
| .. autoclass:: Rotate |
| :members: |
| :special-members: __call__ |
| |
| `Zoom` |
| """""" |
| .. autoclass:: Zoom |
| :members: |
| :special-members: __call__ |
| |
| Utility |
| ^^^^^^^ |
| |
| `Identity` |
| """""""""" |
| .. autoclass:: Identity |
| :members: |
| :special-members: __call__ |
| |
| `AsChannelFirst` |
| """""""""""""""" |
| .. autoclass:: AsChannelFirst |
| :members: |
| :special-members: __call__ |
| |
| `AsChannelLast` |
| """"""""""""""" |
| .. autoclass:: AsChannelLast |
| :members: |
| :special-members: __call__ |
|
|
| `AddChannel` |
| """""""""""" |
| .. autoclass:: AddChannel |
| :members: |
| :special-members: __call__ |
|
|
| `RepeatChannel` |
| """"""""""""""" |
| .. autoclass:: RepeatChannel |
| :members: |
| :special-members: __call__ |
| |
| `CastToType` |
| """""""""""" |
| .. autoclass:: CastToType |
| :members: |
| :special-members: __call__ |
| |
| `ToTensor` |
| """""""""" |
| .. autoclass:: ToTensor |
| :members: |
| :special-members: __call__ |
| |
| `ToNumpy` |
| """"""""" |
| .. autoclass:: ToNumpy |
| :members: |
| :special-members: __call__ |
|
|
| `Transpose` |
| """"""""""" |
| .. autoclass:: Transpose |
| :members: |
| :special-members: __call__ |
| |
| `SqueezeDim` |
| """""""""""" |
| .. autoclass:: SqueezeDim |
| :members: |
| :special-members: __call__ |
| |
| `DataStats` |
| """"""""""" |
| .. autoclass:: DataStats |
| :members: |
| :special-members: __call__ |
|
|
| `SimulateDelay` |
| """"""""""""""" |
| .. autoclass:: SimulateDelay |
| :members: |
| :special-members: __call__ |
| |
| `Lambda` |
| """""""" |
| .. autoclass:: Lambda |
| :members: |
| :special-members: __call__ |
| |
| `LabelToMask` |
| """"""""""""" |
| .. autoclass:: LabelToMask |
| :members: |
| :special-members: __call__ |
| |
| `FgBgToIndices` |
| """"""""""""""" |
| .. autoclass:: FgBgToIndices |
| :members: |
| :special-members: __call__ |
|
|
| Dictionary Transforms |
| --------------------- |
|
|
| Crop and Pad (Dict) |
| ^^^^^^^^^^^^^^^^^^^ |
|
|
| `SpatialPadd` |
| """"""""""""" |
| .. autoclass:: SpatialPadd |
| :members: |
| :special-members: __call__ |
| |
| `BorderPadd` |
| """""""""""" |
| .. autoclass:: BorderPadd |
| :members: |
| :special-members: __call__ |
| |
| `DivisiblePadd` |
| """"""""""""""" |
| .. autoclass:: DivisiblePadd |
| :members: |
| :special-members: __call__ |
|
|
| `SpatialCropd` |
| """""""""""""" |
| .. autoclass:: SpatialCropd |
| :members: |
| :special-members: __call__ |
|
|
| `CenterSpatialCropd` |
| """""""""""""""""""" |
| .. autoclass:: CenterSpatialCropd |
| :members: |
| :special-members: __call__ |
|
|
| `RandSpatialCropd` |
| """""""""""""""""" |
| .. autoclass:: RandSpatialCropd |
| :members: |
| :special-members: __call__ |
|
|
| `RandSpatialCropSamplesd` |
| """"""""""""""""""""""""" |
| .. autoclass:: RandSpatialCropSamplesd |
| :members: |
| :special-members: __call__ |
| |
| `CropForegroundd` |
| """"""""""""""""" |
| .. autoclass:: CropForegroundd |
| :members: |
| :special-members: __call__ |
| |
| `RandCropByPosNegLabeld` |
| """""""""""""""""""""""" |
| .. autoclass:: RandCropByPosNegLabeld |
| :members: |
| :special-members: __call__ |
| |
| Instensity (Dict) |
| ^^^^^^^^^^^^^^^^^ |
| |
| `RandGaussianNoised` |
| """""""""""""""""""" |
| .. autoclass:: RandGaussianNoised |
| :members: |
| :special-members: __call__ |
| |
| `ShiftIntensityd` |
| """"""""""""""""" |
| .. autoclass:: ShiftIntensityd |
| :members: |
| :special-members: __call__ |
|
|
| `RandShiftIntensityd` |
| """"""""""""""""""""" |
| .. autoclass:: RandShiftIntensityd |
| :members: |
| :special-members: __call__ |
| |
| `ScaleIntensityd` |
| """"""""""""""""" |
| .. autoclass:: ScaleIntensityd |
| :members: |
| :special-members: __call__ |
|
|
| `RandScaleIntensityd` |
| """"""""""""""""""""" |
| .. autoclass:: RandScaleIntensityd |
| :members: |
| :special-members: __call__ |
| |
| `NormalizeIntensityd` |
| """"""""""""""""""""" |
| .. autoclass:: NormalizeIntensityd |
| :members: |
| :special-members: __call__ |
|
|
| `ThresholdIntensityd` |
| """"""""""""""""""""" |
| .. autoclass:: ThresholdIntensityd |
| :members: |
| :special-members: __call__ |
| |
| `ScaleIntensityRanged` |
| """""""""""""""""""""" |
| .. autoclass:: ScaleIntensityRanged |
| :members: |
| :special-members: __call__ |
| |
| `ScaleIntensityRangePercentilesd` |
| """"""""""""""""""""""""""""""""" |
| .. autoclass:: ScaleIntensityRangePercentilesd |
| :members: |
| :special-members: __call__ |
|
|
| `AdjustContrastd` |
| """"""""""""""""" |
| .. autoclass:: AdjustContrastd |
| :members: |
| :special-members: __call__ |
| |
| `RandAdjustContrastd` |
| """"""""""""""""""""" |
| .. autoclass:: RandAdjustContrastd |
| :members: |
| :special-members: __call__ |
|
|
| `MaskIntensityd` |
| """""""""""""""" |
| .. autoclass:: MaskIntensityd |
| :members: |
| :special-members: __call__ |
| |
| `GaussianSmoothd` |
| """"""""""""""""" |
| .. autoclass:: GaussianSmoothd |
| :members: |
| :special-members: __call__ |
|
|
| `RandGaussianSmoothd` |
| """"""""""""""""""""" |
| .. autoclass:: RandGaussianSmoothd |
| :members: |
| :special-members: __call__ |
| |
| `GaussianSharpend` |
| """""""""""""""""" |
| .. autoclass:: GaussianSharpend |
| :members: |
| :special-members: __call__ |
| |
| `RandGaussianSharpend` |
| """""""""""""""""""""" |
| .. autoclass:: RandGaussianSharpend |
| :members: |
| :special-members: __call__ |
| |
| IO (Dict) |
| ^^^^^^^^^ |
| |
| `LoadDatad` |
| """"""""""" |
| .. autoclass:: LoadDatad |
| :members: |
| :special-members: __call__ |
| |
| `LoadImaged` |
| """""""""""" |
| .. autoclass:: LoadImaged |
| :members: |
| :special-members: __call__ |
| |
| `LoadNiftid` |
| """""""""""" |
| .. autoclass:: LoadNiftid |
| :members: |
| :special-members: __call__ |
| |
| `LoadPNGd` |
| """""""""" |
| .. autoclass:: LoadPNGd |
| :members: |
| :special-members: __call__ |
| |
| `LoadNumpyd` |
| """""""""""" |
| .. autoclass:: LoadNumpyd |
| :members: |
| :special-members: __call__ |
| |
| Post-processing (Dict) |
| ^^^^^^^^^^^^^^^^^^^^^^ |
| |
| `SplitChanneld` |
| """"""""""""""" |
| .. autoclass:: SplitChanneld |
| :members: |
| :special-members: __call__ |
|
|
| `Activationsd` |
| """""""""""""" |
| .. autoclass:: Activationsd |
| :members: |
| :special-members: __call__ |
|
|
| `AsDiscreted` |
| """"""""""""" |
| .. autoclass:: AsDiscreted |
| :members: |
| :special-members: __call__ |
| |
| `KeepLargestConnectedComponentd` |
| """""""""""""""""""""""""""""""" |
| .. autoclass:: KeepLargestConnectedComponentd |
| :members: |
| :special-members: __call__ |
| |
| `LabelToContourd` |
| """"""""""""""""" |
| .. autoclass:: LabelToContourd |
| :members: |
| :special-members: __call__ |
| |
| `Ensembled` |
| """"""""""" |
| .. autoclass:: Ensembled |
| :members: |
| :special-members: __call__ |
|
|
| `MeanEnsembled` |
| """"""""""""""" |
| .. autoclass:: MeanEnsembled |
| :members: |
| :special-members: __call__ |
| |
| `VoteEnsembled` |
| """"""""""""""" |
| .. autoclass:: VoteEnsembled |
| :members: |
| :special-members: __call__ |
|
|
| Spatial (Dict) |
| ^^^^^^^^^^^^^^ |
|
|
| `Spacingd` |
| """""""""" |
| .. autoclass:: Spacingd |
| :members: |
| :special-members: __call__ |
| |
| `Orientationd` |
| """""""""""""" |
| .. autoclass:: Orientationd |
| :members: |
| :special-members: __call__ |
| |
| `Flipd` |
| """"""" |
| .. autoclass:: Flipd |
| :members: |
| :special-members: __call__ |
| |
| `RandFlipd` |
| """"""""""" |
| .. autoclass:: RandFlipd |
| :members: |
| :special-members: __call__ |
|
|
| `Rotated` |
| """"""""" |
| .. autoclass:: Rotated |
| :members: |
| :special-members: __call__ |
| |
| `RandRotated` |
| """"""""""""" |
| .. autoclass:: RandRotated |
| :members: |
| :special-members: __call__ |
| |
| `Zoomd` |
| """"""" |
| .. autoclass:: Zoomd |
| :members: |
| :special-members: __call__ |
| |
| `RandZoomd` |
| """"""""""" |
| .. autoclass:: RandZoomd |
| :members: |
| :special-members: __call__ |
|
|
| `RandRotate90d` |
| """"""""""""""" |
| .. autoclass:: RandRotate90d |
| :members: |
| :special-members: __call__ |
| |
| `Rotate90d` |
| """"""""""" |
| .. autoclass:: Rotate90d |
| :members: |
| :special-members: __call__ |
|
|
| `Resized` |
| """"""""" |
| .. autoclass:: Resized |
| :members: |
| :special-members: __call__ |
| |
| `RandAffined` |
| """"""""""""" |
| .. autoclass:: RandAffined |
| :members: |
| :special-members: __call__ |
| |
| `Rand2DElasticd` |
| """""""""""""""" |
| .. autoclass:: Rand2DElasticd |
| :members: |
| :special-members: __call__ |
| |
| `Rand3DElasticd` |
| """""""""""""""" |
| .. autoclass:: Rand3DElasticd |
| :members: |
| :special-members: __call__ |
| |
| Utility (Dict) |
| ^^^^^^^^^^^^^^ |
| |
| `Identityd` |
| """"""""""" |
| .. autoclass:: Identityd |
| :members: |
| :special-members: __call__ |
|
|
| `AsChannelFirstd` |
| """"""""""""""""" |
| .. autoclass:: AsChannelFirstd |
| :members: |
| :special-members: __call__ |
| |
| `AsChannelLastd` |
| """""""""""""""" |
| .. autoclass:: AsChannelLastd |
| :members: |
| :special-members: __call__ |
| |
| `AddChanneld` |
| """"""""""""" |
| .. autoclass:: AddChanneld |
| :members: |
| :special-members: __call__ |
|
|
| `RepeatChanneld` |
| """""""""""""""" |
| .. autoclass:: RepeatChanneld |
| :members: |
| :special-members: __call__ |
| |
| `CastToTyped` |
| """"""""""""" |
| .. autoclass:: CastToTyped |
| :members: |
| :special-members: __call__ |
| |
| `ToTensord` |
| """"""""""" |
| .. autoclass:: ToTensord |
| :members: |
| :special-members: __call__ |
|
|
| `ToNumpyd` |
| """""""""" |
| .. autoclass:: ToNumpyd |
| :members: |
| :special-members: __call__ |
| |
| `DeleteItemsd` |
| """""""""""""" |
| .. autoclass:: DeleteItemsd |
| :members: |
| :special-members: __call__ |
| |
| `SqueezeDimd` |
| """"""""""""" |
| .. autoclass:: SqueezeDimd |
| :members: |
| :special-members: __call__ |
| |
| `DataStatsd` |
| """""""""""" |
| .. autoclass:: DataStatsd |
| :members: |
| :special-members: __call__ |
| |
| `SimulateDelayd` |
| """""""""""""""" |
| .. autoclass:: SimulateDelayd |
| :members: |
| :special-members: __call__ |
| |
| `CopyItemsd` |
| """""""""""" |
| .. autoclass:: CopyItemsd |
| :members: |
| :special-members: __call__ |
| |
| `ConcatItemsd` |
| """""""""""""" |
| .. autoclass:: ConcatItemsd |
| :members: |
| :special-members: __call__ |
| |
| `Lambdad` |
| """"""""" |
| .. autoclass:: Lambdad |
| :members: |
| :special-members: __call__ |
|
|
| `LabelToMaskd` |
| """""""""""""" |
| .. autoclass:: LabelToMaskd |
| :members: |
| :special-members: __call__ |
|
|
| `FgBgToIndicesd` |
| """""""""""""""" |
| .. autoclass:: FgBgToIndicesd |
| :members: |
| :special-members: __call__ |
| |
| Transform Adaptors |
| ------------------ |
| .. automodule:: monai.transforms.adaptors |
| |
| `adaptor` |
| ^^^^^^^^^ |
| .. autofunction:: monai.transforms.adaptors.adaptor |
| |
| `apply_alias` |
| ^^^^^^^^^^^^^ |
| .. autofunction:: monai.transforms.adaptors.apply_alias |
| |
| `to_kwargs` |
| ^^^^^^^^^^^ |
| .. autofunction:: monai.transforms.adaptors.to_kwargs |
| |
| Utilities |
| --------- |
| .. automodule:: monai.transforms.utils |
| :members: |
| |
