testbed/Project-MONAI__MONAI/tests/test_data_stats.py

# Copyright 2020 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import logging
import os
import tempfile
import unittest

import numpy as np
import torch
from parameterized import parameterized

from monai.transforms import DataStats

TEST_CASE_1 = [
    {
        "prefix": "test data",
        "data_shape": False,
        "value_range": False,
        "data_value": False,
        "additional_info": None,
        "logger_handler": None,
    },
    np.array([[0, 1], [1, 2]]),
    "test data statistics:",
]

TEST_CASE_2 = [
    {
        "prefix": "test data",
        "data_shape": True,
        "value_range": False,
        "data_value": False,
        "additional_info": None,
        "logger_handler": None,
    },
    np.array([[0, 1], [1, 2]]),
    "test data statistics:\nShape: (2, 2)",
]

TEST_CASE_3 = [
    {
        "prefix": "test data",
        "data_shape": True,
        "value_range": True,
        "data_value": False,
        "additional_info": None,
        "logger_handler": None,
    },
    np.array([[0, 1], [1, 2]]),
    "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)",
]

TEST_CASE_4 = [
    {
        "prefix": "test data",
        "data_shape": True,
        "value_range": True,
        "data_value": True,
        "additional_info": None,
        "logger_handler": None,
    },
    np.array([[0, 1], [1, 2]]),
    "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]",
]

TEST_CASE_5 = [
    {
        "prefix": "test data",
        "data_shape": True,
        "value_range": True,
        "data_value": True,
        "additional_info": lambda x: np.mean(x),
        "logger_handler": None,
    },
    np.array([[0, 1], [1, 2]]),
    "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]\nAdditional info: 1.0",
]

TEST_CASE_6 = [
    {
        "prefix": "test data",
        "data_shape": True,
        "value_range": True,
        "data_value": True,
        "additional_info": lambda x: torch.mean(x.float()),
        "logger_handler": None,
    },
    torch.tensor([[0, 1], [1, 2]]),
    (
        "test data statistics:\nShape: torch.Size([2, 2])\nValue range: (0, 2)\n"
        "Value: tensor([[0, 1],\n        [1, 2]])\nAdditional info: 1.0"
    ),
]

TEST_CASE_7 = [
    np.array([[0, 1], [1, 2]]),
    "test data statistics:\nShape: (2, 2)\nValue range: (0, 2)\nValue: [[0 1]\n [1 2]]\nAdditional info: 1.0\n",
]


class TestDataStats(unittest.TestCase):
    @parameterized.expand([TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_4, TEST_CASE_5, TEST_CASE_6])
    def test_value(self, input_param, input_data, expected_print):
        transform = DataStats(**input_param)
        _ = transform(input_data)
        self.assertEqual(transform.output, expected_print)

    @parameterized.expand([TEST_CASE_7])
    def test_file(self, input_data, expected_print):
        with tempfile.TemporaryDirectory() as tempdir:
            filename = os.path.join(tempdir, "test_data_stats.log")
            handler = logging.FileHandler(filename, mode="w")
            input_param = {
                "prefix": "test data",
                "data_shape": True,
                "value_range": True,
                "data_value": True,
                "additional_info": lambda x: np.mean(x),
                "logger_handler": handler,
            }
            transform = DataStats(**input_param)
            _ = transform(input_data)
            handler.stream.close()
            transform._logger.removeHandler(handler)
            with open(filename, "r") as f:
                content = f.read()
                self.assertEqual(content, expected_print)


if __name__ == "__main__":
    unittest.main()