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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'sub_header', 'description', 'cpt_code', 'code_type'}) and 4 missing columns ({'SHORT_DESCRIPTION', 'CODE', 'LONG_DESCRIPTION', 'NF EXCL'}).
This happened while the csv dataset builder was generating data using
hf://datasets/mozay22/medical_code_mapping/cpt_codes_consolidated.csv (at revision c38ed532ab9b9914f2f8d6e0726b23132e94cdec)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
cpt_code: string
sub_header: string
description: string
code_type: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 739
to
{'CODE': Value(dtype='string', id=None), 'SHORT_DESCRIPTION': Value(dtype='string', id=None), 'LONG_DESCRIPTION': Value(dtype='string', id=None), 'NF EXCL': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1321, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 935, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'sub_header', 'description', 'cpt_code', 'code_type'}) and 4 missing columns ({'SHORT_DESCRIPTION', 'CODE', 'LONG_DESCRIPTION', 'NF EXCL'}).
This happened while the csv dataset builder was generating data using
hf://datasets/mozay22/medical_code_mapping/cpt_codes_consolidated.csv (at revision c38ed532ab9b9914f2f8d6e0726b23132e94cdec)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
CODE string | SHORT_DESCRIPTION string | LONG_DESCRIPTION string | NF EXCL null |
|---|---|---|---|
A000 | Cholera due to Vibrio cholerae 01, biovar cholerae | Cholera due to Vibrio cholerae 01, biovar cholerae | null |
A001 | Cholera due to Vibrio cholerae 01, biovar eltor | Cholera due to Vibrio cholerae 01, biovar eltor | null |
A009 | Cholera, unspecified | Cholera, unspecified | null |
A0100 | Typhoid fever, unspecified | Typhoid fever, unspecified | null |
A0101 | Typhoid meningitis | Typhoid meningitis | null |
A0102 | Typhoid fever with heart involvement | Typhoid fever with heart involvement | null |
A0103 | Typhoid pneumonia | Typhoid pneumonia | null |
A0104 | Typhoid arthritis | Typhoid arthritis | null |
A0105 | Typhoid osteomyelitis | Typhoid osteomyelitis | null |
A0109 | Typhoid fever with other complications | Typhoid fever with other complications | null |
A011 | Paratyphoid fever A | Paratyphoid fever A | null |
A012 | Paratyphoid fever B | Paratyphoid fever B | null |
A013 | Paratyphoid fever C | Paratyphoid fever C | null |
A014 | Paratyphoid fever, unspecified | Paratyphoid fever, unspecified | null |
A020 | Salmonella enteritis | Salmonella enteritis | null |
A021 | Salmonella sepsis | Salmonella sepsis | null |
A0220 | Localized salmonella infection, unspecified | Localized salmonella infection, unspecified | null |
A0221 | Salmonella meningitis | Salmonella meningitis | null |
A0222 | Salmonella pneumonia | Salmonella pneumonia | null |
A0223 | Salmonella arthritis | Salmonella arthritis | null |
A0224 | Salmonella osteomyelitis | Salmonella osteomyelitis | null |
A0225 | Salmonella pyelonephritis | Salmonella pyelonephritis | null |
A0229 | Salmonella with other localized infection | Salmonella with other localized infection | null |
A028 | Other specified salmonella infections | Other specified salmonella infections | null |
A029 | Salmonella infection, unspecified | Salmonella infection, unspecified | null |
A030 | Shigellosis due to Shigella dysenteriae | Shigellosis due to Shigella dysenteriae | null |
A031 | Shigellosis due to Shigella flexneri | Shigellosis due to Shigella flexneri | null |
A032 | Shigellosis due to Shigella boydii | Shigellosis due to Shigella boydii | null |
A033 | Shigellosis due to Shigella sonnei | Shigellosis due to Shigella sonnei | null |
A038 | Other shigellosis | Other shigellosis | null |
A039 | Shigellosis, unspecified | Shigellosis, unspecified | null |
A040 | Enteropathogenic Escherichia coli infection | Enteropathogenic Escherichia coli infection | null |
A041 | Enterotoxigenic Escherichia coli infection | Enterotoxigenic Escherichia coli infection | null |
A042 | Enteroinvasive Escherichia coli infection | Enteroinvasive Escherichia coli infection | null |
A043 | Enterohemorrhagic Escherichia coli infection | Enterohemorrhagic Escherichia coli infection | null |
A044 | Other intestinal Escherichia coli infections | Other intestinal Escherichia coli infections | null |
A045 | Campylobacter enteritis | Campylobacter enteritis | null |
A046 | Enteritis due to Yersinia enterocolitica | Enteritis due to Yersinia enterocolitica | null |
A047 | Enterocolitis due to Clostridium difficile | Enterocolitis due to Clostridium difficile | null |
A0471 | Enterocolitis due to Clostridium difficile, recurrent | Enterocolitis due to Clostridium difficile, recurrent | null |
A0472 | Enterocolitis d/t Clostridium difficile, not spcf as recur | Enterocolitis due to Clostridium difficile, not specified as recurrent | null |
A048 | Other specified bacterial intestinal infections | Other specified bacterial intestinal infections | null |
A049 | Bacterial intestinal infection, unspecified | Bacterial intestinal infection, unspecified | null |
A050 | Foodborne staphylococcal intoxication | Foodborne staphylococcal intoxication | null |
A051 | Botulism food poisoning | Botulism food poisoning | null |
A052 | Foodborne Clostridium perfringens intoxication | Foodborne Clostridium perfringens [Clostridium welchii] intoxication | null |
A053 | Foodborne Vibrio parahaemolyticus intoxication | Foodborne Vibrio parahaemolyticus intoxication | null |
A054 | Foodborne Bacillus cereus intoxication | Foodborne Bacillus cereus intoxication | null |
A055 | Foodborne Vibrio vulnificus intoxication | Foodborne Vibrio vulnificus intoxication | null |
A058 | Other specified bacterial foodborne intoxications | Other specified bacterial foodborne intoxications | null |
A059 | Bacterial foodborne intoxication, unspecified | Bacterial foodborne intoxication, unspecified | null |
A060 | Acute amebic dysentery | Acute amebic dysentery | null |
A061 | Chronic intestinal amebiasis | Chronic intestinal amebiasis | null |
A062 | Amebic nondysenteric colitis | Amebic nondysenteric colitis | null |
A063 | Ameboma of intestine | Ameboma of intestine | null |
A064 | Amebic liver abscess | Amebic liver abscess | null |
A065 | Amebic lung abscess | Amebic lung abscess | null |
A066 | Amebic brain abscess | Amebic brain abscess | null |
A067 | Cutaneous amebiasis | Cutaneous amebiasis | null |
A0681 | Amebic cystitis | Amebic cystitis | null |
A0682 | Other amebic genitourinary infections | Other amebic genitourinary infections | null |
A0689 | Other amebic infections | Other amebic infections | null |
A069 | Amebiasis, unspecified | Amebiasis, unspecified | null |
A070 | Balantidiasis | Balantidiasis | null |
A071 | Giardiasis [lambliasis] | Giardiasis [lambliasis] | null |
A072 | Cryptosporidiosis | Cryptosporidiosis | null |
A073 | Isosporiasis | Isosporiasis | null |
A074 | Cyclosporiasis | Cyclosporiasis | null |
A078 | Other specified protozoal intestinal diseases | Other specified protozoal intestinal diseases | null |
A079 | Protozoal intestinal disease, unspecified | Protozoal intestinal disease, unspecified | null |
A080 | Rotaviral enteritis | Rotaviral enteritis | null |
A0811 | Acute gastroenteropathy due to Norwalk agent | Acute gastroenteropathy due to Norwalk agent | null |
A0819 | Acute gastroenteropathy due to other small round viruses | Acute gastroenteropathy due to other small round viruses | null |
A082 | Adenoviral enteritis | Adenoviral enteritis | null |
A0831 | Calicivirus enteritis | Calicivirus enteritis | null |
A0832 | Astrovirus enteritis | Astrovirus enteritis | null |
A0839 | Other viral enteritis | Other viral enteritis | null |
A084 | Viral intestinal infection, unspecified | Viral intestinal infection, unspecified | null |
A088 | Other specified intestinal infections | Other specified intestinal infections | null |
A09 | Infectious gastroenteritis and colitis, unspecified | Infectious gastroenteritis and colitis, unspecified | null |
A150 | Tuberculosis of lung | Tuberculosis of lung | null |
A154 | Tuberculosis of intrathoracic lymph nodes | Tuberculosis of intrathoracic lymph nodes | null |
A155 | Tuberculosis of larynx, trachea and bronchus | Tuberculosis of larynx, trachea and bronchus | null |
A156 | Tuberculous pleurisy | Tuberculous pleurisy | null |
A157 | Primary respiratory tuberculosis | Primary respiratory tuberculosis | null |
A158 | Other respiratory tuberculosis | Other respiratory tuberculosis | null |
A159 | Respiratory tuberculosis unspecified | Respiratory tuberculosis unspecified | null |
A170 | Tuberculous meningitis | Tuberculous meningitis | null |
A171 | Meningeal tuberculoma | Meningeal tuberculoma | null |
A1781 | Tuberculoma of brain and spinal cord | Tuberculoma of brain and spinal cord | null |
A1782 | Tuberculous meningoencephalitis | Tuberculous meningoencephalitis | null |
A1783 | Tuberculous neuritis | Tuberculous neuritis | null |
A1789 | Other tuberculosis of nervous system | Other tuberculosis of nervous system | null |
A179 | Tuberculosis of nervous system, unspecified | Tuberculosis of nervous system, unspecified | null |
A1801 | Tuberculosis of spine | Tuberculosis of spine | null |
A1802 | Tuberculous arthritis of other joints | Tuberculous arthritis of other joints | null |
A1803 | Tuberculosis of other bones | Tuberculosis of other bones | null |
A1809 | Other musculoskeletal tuberculosis | Other musculoskeletal tuberculosis | null |
A1810 | Tuberculosis of genitourinary system, unspecified | Tuberculosis of genitourinary system, unspecified | null |
A1811 | Tuberculosis of kidney and ureter | Tuberculosis of kidney and ureter | null |
End of preview.