script.py

import os
import shutil
import re
from collections import defaultdict

def get_all_source_folders(scrape_dir):
    """
    Recursively scrapes a directory to get all folders.
    Returns a dictionary mapping: folder_name -> list of full_source_paths
    """
    source_folders = defaultdict(list)
    
    if not os.path.exists(scrape_dir):
        print(f"Error: Scrape directory '{scrape_dir}' does not exist.")
        return source_folders

    # Walk through the entire directory tree to map every available source folder
    for root, dirs, files in os.walk(scrape_dir):
        for d in dirs:
            source_folders[d].append(os.path.join(root, d))
                    
    return source_folders

def get_subfolder_names(folder_path):
    """Returns a list of subfolder names immediately inside a given directory."""
    return [d for d in os.listdir(folder_path) if os.path.isdir(os.path.join(folder_path, d))]

def process_folders(scrape_dir, dest_root_path, dry_run=True):
    # 1. Scrape all folders from the source directory to build our lookup map
    source_folders = get_all_source_folders(scrape_dir)
    if not source_folders:
        print("No source folders found.")
        return

    if not os.path.exists(dest_root_path):
        print(f"Error: Destination root '{dest_root_path}' does not exist.")
        return

    print("=" * 60)
    print(f"MODE: {'DRY RUN (Mapping Only)' if dry_run else 'EXECUTION (Copying Files)'}")
    print("=" * 60)

    # Pattern to extract the date and hour: YYYY-MM-DD_HH
    file_pattern = re.compile(r'^(\d{4}-\d{2}-\d{2}_\d{2})-\d{2}-\d{2}')

    # 2. Iterate exactly to the second level of the destination directory
    for level1 in os.listdir(dest_root_path):
        level1_path = os.path.join(dest_root_path, level1)
        if not os.path.isdir(level1_path):
            continue
            
        for level2 in os.listdir(level1_path):
            dest_path = os.path.join(level1_path, level2)
            if not os.path.isdir(dest_path):
                continue

            folder_name = level2

            # 3. Look up the destination folder in our source map
            src_paths = source_folders.get(folder_name, [])
            
            # 4. Handle matching conditions
            if not src_paths:
                if dry_run:
                    print(f"[UNMATCHED] Dest: '{folder_name}' -> No source found.")
                continue
                
            if len(src_paths) > 1:
                print(f"[CONFLICT]  Dest: '{folder_name}' -> Matches {len(src_paths)} sources. Skipping.")
                if dry_run:
                    for p in src_paths:
                        print(f"            - {p}")
                continue

            # We have exactly one match
            src_path = src_paths[0]

            if dry_run:
                print(f"[MAPPED]    Dest: '{folder_name}' \n            <- Source: '{src_path}'")
                continue # Skip the actual file processing during a dry run

            # ---------------------------------------------------------
            # The following code only runs if dry_run=False
            # ---------------------------------------------------------

            # 5. Get the subfolders (e.g., 'camera') from the source
            src_subfolders = get_subfolder_names(src_path)

            # 6. Process files INSIDE the source subfolders
            for subfolder in src_subfolders:
                src_sub_path = os.path.join(src_path, subfolder)
                dest_sub_path = os.path.join(dest_path, subfolder)

                # Ensure the camera folder exists in the destination
                os.makedirs(dest_sub_path, exist_ok=True)

                # Get files and sort chronologically
                files = [f for f in os.listdir(src_sub_path) if os.path.isfile(os.path.join(src_sub_path, f))]
                files.sort() 
                
                selected_files = {}
                for file_name in files:
                    match = file_pattern.search(file_name)
                    if match:
                        hour_key = match.group(1)
                        if hour_key not in selected_files:
                            selected_files[hour_key] = file_name

                # 7. Copy the filtered files while checking for duplicates
                copied_count = 0
                for file_name in selected_files.values():
                    src_file = os.path.join(src_sub_path, file_name)
                    dest_file = os.path.join(dest_sub_path, file_name)
                    
                    if os.path.exists(dest_file):
                        continue
                        
                    shutil.copy2(src_file, dest_file)
                    copied_count += 1
                    
                if copied_count > 0:
                    print(f"Copied {copied_count} new files into '{folder_name}/{subfolder}'.")
            
    print("\nProcess completed.")

if __name__ == "__main__":
    # Define your paths here
    SCRAPE_DIRECTORY = "/media/ngaggion/DATA/Raices/Datasets" 
    DESTINATION_ROOT = "/media/ngaggion/DATA/Raices/NewData/ArabidopsisDataset"
    
    # Run first with dry_run=True to see the mappings. 
    # Change to False when you are ready to copy files.
    process_folders(SCRAPE_DIRECTORY, DESTINATION_ROOT, dry_run=False)