Sample_zero-shot_Classification_CXR14/models/transformer.py

"""
Code modified from DETR tranformer:
https://github.com/facebookresearch/detr
Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved
"""

import copy
from typing import Optional, List
import pickle as cp

import torch
import torch.nn.functional as F
from torch import nn, Tensor


class TransformerDecoder(nn.Module):
    def __init__(self, decoder_layer, num_layers, norm=None, return_intermediate=False):
        super().__init__()
        self.layers = _get_clones(decoder_layer, num_layers)
        self.num_layers = num_layers
        self.norm = norm
        self.return_intermediate = return_intermediate

    def forward(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        output = tgt
        T, B, C = memory.shape
        intermediate = []
        atten_layers = []
        for n, layer in enumerate(self.layers):

            residual = True
            output, ws = layer(
                output,
                memory,
                tgt_mask=tgt_mask,
                memory_mask=memory_mask,
                tgt_key_padding_mask=tgt_key_padding_mask,
                memory_key_padding_mask=memory_key_padding_mask,
                pos=pos,
                query_pos=query_pos,
                residual=residual,
            )
            atten_layers.append(ws)
            if self.return_intermediate:
                intermediate.append(self.norm(output))
        if self.norm is not None:
            output = self.norm(output)
            if self.return_intermediate:
                intermediate.pop()
                intermediate.append(output)

        if self.return_intermediate:
            return torch.stack(intermediate)
        return output, atten_layers


class TransformerDecoderLayer(nn.Module):
    def __init__(
        self,
        d_model,
        nhead,
        dim_feedforward=2048,
        dropout=0.1,
        activation="relu",
        normalize_before=False,
    ):
        super().__init__()
        self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
        self.multihead_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout)
        # Implementation of Feedforward model
        self.linear1 = nn.Linear(d_model, dim_feedforward)
        self.dropout = nn.Dropout(dropout)
        self.linear2 = nn.Linear(dim_feedforward, d_model)

        self.norm1 = nn.LayerNorm(d_model)
        self.norm2 = nn.LayerNorm(d_model)
        self.norm3 = nn.LayerNorm(d_model)
        self.dropout1 = nn.Dropout(dropout)
        self.dropout2 = nn.Dropout(dropout)
        self.dropout3 = nn.Dropout(dropout)

        self.activation = _get_activation_fn(activation)
        self.normalize_before = normalize_before

    def with_pos_embed(self, tensor, pos: Optional[Tensor]):
        return tensor if pos is None else tensor + pos

    def forward_post(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
        residual=True,
    ):
        q = k = self.with_pos_embed(tgt, query_pos)
        tgt2, ws = self.self_attn(
            q, k, value=tgt, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
        )
        tgt = self.norm1(tgt)
        tgt2, ws = self.multihead_attn(
            query=self.with_pos_embed(tgt, query_pos),
            key=self.with_pos_embed(memory, pos),
            value=memory,
            attn_mask=memory_mask,
            key_padding_mask=memory_key_padding_mask,
        )

        # attn_weights [B,NUM_Q,T]
        tgt = tgt + self.dropout2(tgt2)
        tgt = self.norm2(tgt)
        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt))))
        tgt = tgt + self.dropout3(tgt2)
        tgt = self.norm3(tgt)
        return tgt, ws

    def forward_pre(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
    ):
        tgt2 = self.norm1(tgt)
        q = k = self.with_pos_embed(tgt2, query_pos)
        tgt2, ws = self.self_attn(
            q, k, value=tgt2, attn_mask=tgt_mask, key_padding_mask=tgt_key_padding_mask
        )
        tgt = tgt + self.dropout1(tgt2)
        tgt2 = self.norm2(tgt)
        tgt2, attn_weights = self.multihead_attn(
            query=self.with_pos_embed(tgt2, query_pos),
            key=self.with_pos_embed(memory, pos),
            value=memory,
            attn_mask=memory_mask,
            key_padding_mask=memory_key_padding_mask,
        )
        tgt = tgt + self.dropout2(tgt2)
        tgt2 = self.norm3(tgt)
        tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt2))))
        tgt = tgt + self.dropout3(tgt2)
        return tgt, attn_weights

    def forward(
        self,
        tgt,
        memory,
        tgt_mask: Optional[Tensor] = None,
        memory_mask: Optional[Tensor] = None,
        tgt_key_padding_mask: Optional[Tensor] = None,
        memory_key_padding_mask: Optional[Tensor] = None,
        pos: Optional[Tensor] = None,
        query_pos: Optional[Tensor] = None,
        residual=True,
    ):
        if self.normalize_before:
            return self.forward_pre(
                tgt,
                memory,
                tgt_mask,
                memory_mask,
                tgt_key_padding_mask,
                memory_key_padding_mask,
                pos,
                query_pos,
            )
        return self.forward_post(
            tgt,
            memory,
            tgt_mask,
            memory_mask,
            tgt_key_padding_mask,
            memory_key_padding_mask,
            pos,
            query_pos,
            residual,
        )


def _get_clones(module, N):
    return nn.ModuleList([copy.deepcopy(module) for i in range(N)])


def _get_activation_fn(activation):
    """Return an activation function given a string"""
    if activation == "relu":
        return F.relu
    if activation == "gelu":
        return F.gelu
    if activation == "glu":
        return F.glu
    raise RuntimeError(f"activation should be relu/gelu, not {activation}.")