Add pipeline tag and improve model card

#1
by nielsr HF Staff - opened
Files changed (1) hide show
  1. README.md +12 -6
README.md CHANGED
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  <h1 align="center">
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  TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation
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  </h1>
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- <div align="center">
 
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  <a href="https://arxiv.org/abs/2605.09810"><img src="https://img.shields.io/badge/Arxiv-2605.09810-red?style=for-the-badge&logo=Arxiv" alt="arXiv"/></a>
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-
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  </div>
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  ![Screenshot 2026-05-10 at 6.52.29 PM](https://cdn-uploads.huggingface.co/production/uploads/64cd5b3f0494187a9e8b7c69/38-6PQ83pPraF7KAs3g3E.png)
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- TD3B is a sequence-based generative framework that designs peptide binders with specified agonist or antagonist behavior. It combines a Direction Oracle, a soft binding-affinity gate, and amortized fine-tuning of a pre-trained discrete diffusion model (MDLM).
 
 
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  ## Installation
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@@ -133,9 +139,9 @@ bash run.sh --baseline tds --device cuda:0
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  @inproceedings{
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  cao2026td3b,
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  title={TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation},
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- author={Anonymous},
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  booktitle={Forty-third International Conference on Machine Learning},
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  year={2026},
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- url={https://openreview.net/forum?id=RNuC8Nj6rD}
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  }
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- ```
 
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+ ---
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+ pipeline_tag: text-generation
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+ ---
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+
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  <h1 align="center">
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  TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation
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  </h1>
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+ <div align="center Murphy">
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+ <a href="https://huggingface.co/papers/2605.09810"><img src="https://img.shields.io/badge/Paper-2605.09810-red?style=for-the-badge" alt="Paper"/></a>
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  <a href="https://arxiv.org/abs/2605.09810"><img src="https://img.shields.io/badge/Arxiv-2605.09810-red?style=for-the-badge&logo=Arxiv" alt="arXiv"/></a>
 
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  </div>
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  ![Screenshot 2026-05-10 at 6.52.29 PM](https://cdn-uploads.huggingface.co/production/uploads/64cd5b3f0494187a9e8b7c69/38-6PQ83pPraF7KAs3g3E.png)
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+ TD3B is a sequence-based generative framework that designs peptide binders with specified agonist or antagonist behavior. It combines a target-aware Direction Oracle, a soft binding-affinity gate, and amortized fine-tuning of a pre-trained discrete diffusion model (MDLM).
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+
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+ The model was presented in [TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation](https://huggingface.co/papers/2605.09810).
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  ## Installation
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  @inproceedings{
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  cao2026td3b,
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  title={TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation},
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+ author={Hanqun Cao and Aastha Pal and Sophia Tang and Yinuo Zhang and Jingjie Zhang and Pheng Ann Heng and Pranam Chatterjee},
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  booktitle={Forty-third International Conference on Machine Learning},
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  year={2026},
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+ url={https://huggingface.co/papers/2605.09810}
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  }
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+ ```