shivendrra/BiosaicTokenizer
Updated
seq stringlengths 1.82k 1.57M | seq_len int64 3.05k 1.57M | id stringlengths 8 11 | name stringlengths 8 11 | host stringlengths 3 64 | species stringlengths 3 67 | organism_name stringlengths 9 61 | location_in_host stringclasses 148
values | family stringclasses 232
values | genus stringlengths 6 26 | molecule_type stringclasses 19
values | decribtion_full stringlengths 222 3.54k | __index_level_0__ int64 0 210k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
gaaattaaaacagctctggggttgttcccaccccagaggcccacgtggcggctagtacactggtattacggtacccttgtacgcctgttttacacccctttcccccgtaacttagaagcttttaaattcaagttcaacagtgagtggtacaacccagtactactatgaacaagcacttctgttaccccggtgagattgcataagctgtccccacggctaaaagcgattgatccgttatccgctcttgtacttcgagaagcccagtaaaaccttgggatcctcgatgcgttgcgctcaacactcaaccccagagtgtagct... | 7,462 | AB769152.1 | AB769152.1 | Homo sapiens | Coxsackievirus A24 | Enterovirus C | eye | Picornaviridae | Enterovirus | ssRNA(+) | AB769152.1 |Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011|set:AB769152|Coxsackievirus A24||2012-12-05T00:00:00Z|Department of Biological Sciences; 2085 Ozato, Nanjo, Okinawa 901-1202|Japan|Nidaira,M., Kuba,Y., Saitoh,M., Taira,K., Maeshiro,N., Mahoe,Y., Kyan,H., Takara,T., Okano,S., Kuda... | 0 |
acacagagacgcccagatgaacttggaagtgctttgtggtaggataaacgtggagaatgggctgtctcttggagaaccaggcctgtacgaccaaatctacgacaggccagggctcccagacctagatgtgacagtcgatgccacaggtgtgactgtggacataggggctgtgccagactcagcatcacaactgggttcatcaatcaatgctgggttgatcacaatccagctctctgaagcatataagatcaatcatgacttcacgttttctggtctgtcaaagacaacagaccgacgcctctcagaggtattccccatta... | 6,368 | OM453149.1 | OM453149.1 | Homo sapiens | Severe fever with thrombocytopenia syndrome virus | Bandavirus dabieense | blood | Phenuiviridae | Bandavirus | ssRNA(+/-) | OM453149.1 |Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, complete sequence||Severe fever with thrombocytopenia syndrome virus||2022-06-21T00:00:00Z|Beijing Institute of Microbiology and Epidemiology, State Key Laboratory of Pathogen and Biosecurity|China|Dai,Z.N., Peng,X.F., Li... | 1 |
gatttctcgaccttgttcgtttatctggtgacttgcgctaactgttgctttgcgtagggaatttctctccataactattatctttagatttggggtttgaaggctgggtctacctttcggggggataaattgtaacttccagcaaataagcgacatggagaccatcaagagaatgatttggcctaagaaggagatctttgtaggagattttgcgatcggagttaataggacggcaccggtggacatcttccagttggtgtgtcgtgtggttctaagatacatgaggacagggaaaatagagtgtgattcagacagcatga... | 4,760 | OL472234.1 | OL472234.1 | Solanum lycopersicum | Tomato bushy stunt virus | Tombusvirus lycopersici | Tombusviridae | Tombusvirus | ssRNA(+) | OL472234.1 |MAG: Tomato bushy stunt virus isolate STR20ST1, complete genome||Tomato bushy stunt virus|SRR16552268|2022-07-23T00:00:00Z|National Institute of Biology, Department of Biotechnology and Systems Biology|Slovenia|Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., M... | 4 | |
ggctattaaagctgtacaatggggaagtacaatctaatcttgtcagaatatttatcatttgtttacaattcacaatctgcagttcaaataccaatttattattcttccaatccagaattagaaaaaagatgtattgaatttcatgctaaatgtgttgacaattctaaaaaaggtatatcattaaaacctgtatttgaagagtataaagatgtaatagataatgcaacgttactatctatattatcatattcttatgataaatacaacgctgtggaacggaaactagtcaattatgctaaaggtaaacctttagaggctga... | 3,302 | MW384187.1 | MW384187.1 | Homo sapiens | Human rotavirus A | Rotavirus A | feces | Sedoreoviridae | Rotavirus | dsRNA | MW384187.1 |Human rotavirus A strain RVA/Human-wt/CHN/Fuzhou18-96/2018/G9P[8] segment 1, complete sequence||Human rotavirus A||2022-05-02T00:00:00Z|Viral Disease Prevention and Control Laboratory, Fujian Provincial Center for Disease Control and Prevention|China|Huang,Z., Wu,B., Lin,Q., Lin,W., Weng,Y.||Rotavirus A|Rot... | 10 |
aactaaacgaaatttttctagtgctgtcatttgttatggcagtcctagtgtaattgaaatttcgtcaagtttgtaaactggttaggcaagtgttgtattttctgtgtctaagcactggtgattctgttcactagtgcatacactgatatttaagtggtgttccgtcactgcttattgtggaagcaacgttctgtcgttgtggaaaccaataactgctaaccatgttttacaatcaagtgacacttgctgttgcaagtgattcggaaatttcaggttttggttttgccattccttctgtagccgttcgcacttatagcgaa... | 27,410 | KF530114.1 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | 13 | |
ggtatcagagccatgaataggtctaagaccataactcaagagggtaaaacctcatcaaccaatcaaagagttcttaactctaaaattaaacgatctgtttggatcgaaactagttcctcagcaacgggttgcgacagcacatccaccgttgagtttcagaacaacatcgaatgcgtttacgccaacttcgactctcagctcaagtcgtcgtacgatggtagatctaaaaagatcaaaactctaagccttaaaaatcttagatgttatgaagccttcctcaggaagtaccttctggaacaataaaatctctctgagaatag... | 8,034 | AB863202.1 | AB863202.1 | Brassica oleracea var. botrytis | Cauliflower mosaic virus | Caulimovirus tessellobrassicae | plant leaf | Caulimoviridae | Caulimovirus | dsDNA-RT | AB863202.1 |Cauliflower mosaic virus DNA, complete genome, isolate: GRC92D|set:AB863202|Cauliflower mosaic virus||2014-03-07T00:00:00Z|Faculty of Agriculture, Laboratory of Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502|Japan|Yasaka,R., Nguyen,H.D., Ho,S.Y., Duchene,S., Korkmaz,S., Katis,N., Takahashi,H., G... | 14 |
ggctattaaagctatacaatggggaagtataatctaatcttgtcagaatacttatcatttatatataattcacaatctgcagttcaaattccaatttattactcttccaatagtgagttggaaagtagatgtatagaatttcattccaaatgtttagaaaattcaaaaaatggtctatcactgaaaaaactatttgatgaatatagtgatgtcattaagaatgctacgctattatcaatattatcatactcttacgacaaatataacgccgttgaacggaaattagtcaaatatgcgaaaggtaaaccgcttgaggcaga... | 3,302 | JF460823.1 | JF460823.1 | Homo sapiens | Rotavirus A Hu/BEL/F01322/2009/G3P[6] | Rotavirus A | feces | Sedoreoviridae | Rotavirus | dsRNA | JF460823.1 |Rotavirus A Hu/BEL/F01322/2009/G3P[6] segment 1, complete sequence|set:ec53f74341a132dd977a23873806a7bf51f21021|Rotavirus A Hu/BEL/F01322/2009/G3P[6]||2012-02-28T00:00:00Z|Laboratory of Clinical Virology, Rega Institute for Medical Research, Department of Microbiology and Immunology|Belgium|Heylen,E., Zelle... | 15 |
ggaaccaaccacgacggagtgctcctataaaggcgcgggtcggtaccagacggcgtgaggagcgggagaggaagaggcctccggttgcaggtaagtgcaacacaaaaaagaaatagctgtcttttatccaggaaggggtaataagatagagtgggagatgggcgtgagaaactccgtcttgtcagggaagaaagcagatgaattagaaaaaattaggctacgacccaacggaaagaaaaagtacatgttgaagcatgtagtatgggcagcaaatgaattagatagatttggattagcagaaagcctgttggagaacaaag... | 9,041 | PP487955.1 | PP487955.1 | Macaca mulatta | Simian immunodeficiency virus | Simian immunodeficiency virus | Retroviridae | Lentivirus | ssRNA-RT | PP487955.1 |Simian immunodeficiency virus isolate H36J.PBMC.06MAR19.P4B19.group3, complete genome||Simian immunodeficiency virus||2024-03-22T00:00:00Z|Frederick National Laboratory, AIDS and Cancer Virus Program|USA|Keele,B.F., Immonen,T.T., Fennessey,C.M.|H36J.PBMC.06MAR19.P4B19.group3|Simian immunodeficiency virus|Le... | 16 | |
gtatttttatcaactctaactagccaagtgcttaattgagtggttggagaccagtaattttgaagcgaccgcttgcgataaaacgtttcaaaaatttgctgttgttatattcaatggatcagtctattttgagtaaaatcaccagtgatgattatgtgaatgcgatacttcacactagtgccactagagtgggttcggatttacataatgctatgtgtaatgtaatagtagatcagataaaagatagtacagaaaaaaacaaaaagaaaaagaaaatagatgtaaaaaggaatcttaatgaggatcagatacagttgctt... | 6,042 | KU955467.1 | KU955467.1 | Solanum tuberosum | Potato mop-top virus | Potato mop-top virus | Virgaviridae | Pomovirus | ssRNA(+) | KU955467.1 |Potato mop-top virus isolate C29_P70 segment RNA-rep, complete sequence|set:1e4e3a386a9cdd9d52a7d68605d53c89ac087ab1|Potato mop-top virus||2017-05-24T00:00:00Z|Swedish University of Agricultural Sciences, Plant Biology|Sweden|Kalyandurg,P., Gil,J.F., Lukhovitskaya,N.I., Flores,B., Muller,G., Chuquillanqui,C... | 17 | |
tctcacagtgtacggacctaaagttccccccatagggtgtacctaaagcccagccaatcacctaaagtcaaccttcggttgaccttgagggttccctaagggtttgtctttgggtgttaccttgagtgtctctctgtgtccctacctgttacagtctcctaaagtatcctcctaaagtcacctcctaacgtccatcctaaagccaacacctaaagccaacacctaaagacccatcaagtcaacgcctatcttaaagtttaaacataaagaccagacctaaagaccagacctaaagacactacataaagaccagacctaaa... | 38,846 | OL964739.1 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | 21 | |
accaaacaaaattggttatagaaaaataaaccaaagcagagaatataaaggacttaggatcaaagaatccgaaagttggtcctggtaccggattaaccaaaatggcaggtttatttggtacactgagagaattcaaggacttcaaaaatggaccacctaaatcaggccttttgcatggatcattgggtggaatcaaaaagaaggttattgtgcccgttccagctgatactaatcctgctcgtcgctggtgggctctcaagtttttattacagcttgtatggtcatttcgggctgctggtgctgcggcaacaggtgctttg... | 17,826 | MG203878.1 | MG203878.1 | Miniopterus griveaudi | bat paramyxovirus 17770 | Jeilongvirus madagascarense | spleen, abdominal cavity | Paramyxoviridae | Jeilongvirus | ssRNA(-) | MG203878.1 |Bat paramyxovirus 17770 strain Bat-PV-17770, complete genome|set:MG203878|bat paramyxovirus 17770||2019-10-19T00:00:00Z|Universite de La Reunion, UMR PIMIT|France|Pascalis,H., Melade,J., Piorkowski,G., Turpin,M., Temmam,S., Ghawar,W., Goodman,S.M., Mavingui,P., de Lamballerie,X.N., Dellagi,K.||Jeilongvirus ... | 22 |
ctccaccactttccaccaaactcttcaagatcccagagtcagggccctgtactttcctgctggtggctccagttcaggaacagtgagccctgctcagaacactgtctctgccatatcgtcaatcttatcgaagactggggaccctgtaccgaacatggagaacatcgcatcaggactcctaggacccctgctcgtgttacaggcggggtttttcttgttgacaaaaatcctcacaataccacagagtctagactcgtggtggacttctctcaattttctagggggaacacccgtgtgtcttggccaaaattcgcagtccc... | 3,215 | GU815727.1 | GU815727.1 | Homo sapiens | Hepatitis B virus | Hepatitis B virus | Hepadnaviridae | Orthohepadnavirus | dsDNA-RT | GU815727.1 |Hepatitis B virus isolate F2-2, complete genome|set:GU815727|Hepatitis B virus||2010-04-17T00:00:00Z|Institute of Clinical Medicine, National Taiwan University|Taiwan|Wang,H.Y., Chien,M.H., Huang,H.P., Chang,H.C., Wu,C.C., Chen,P.J., Chang,M.H., Chen,D.S., Wang,H.-Y., Chien,M.-H., Huang,H.-P., Chang,H.-C., ... | 25 | |
ggtatctgtttgccgacaataccacgatgtttcgcgatttgtgccgatacgctagtcagatagtggttggtagcacagtgctggctgtgaatgttagtgttttgtccgtagctgtacaacttcggggtgcagtggcggtctatgaagtggccagtaaatgtgtgacagcgctggaagactgcgtttccgatcttcgtgattcgctgaagccagttcccgacgagctgtacaatccttccttgtgtgcggctctgcgtatgaataacactgacacagaactaacagctgaagaccttttaaccacagacagagttttggtc... | 3,929 | NC_015227.2 | NC_015227.2 | Lespedeza procumbens | Trailing lespedeza virus 1 | Tralespevirus lespedezae | plant leaf | Tombusviridae | Tralespevirus | ssRNA(+) | NC_015227.2 |Trailing lespedeza virus 1 isolate 06TGP01091, complete genome|GCF_000892335.1|Trailing lespedeza virus 1||2011-03-21T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Adams,M.J., Lefkowitz,E.J., King,A.M., Bamford,D.H., Breitbart,M., Davison,A.J., Ghabrial,S.A., Gorbalenya,A.E., Knowles,N.J... | 26 |
acaaaaaaacatgggacaagtgaaaatgtctcttcaggggattcacctgagtgatctatcatacaagcatgctatattaaaagagtctcagtacacaataaaaagagatgtaggcacgacaacagcagtgacaccctcatcattgcaacaagaaataacactattgtgtggagaaattctatatgctaagcatactgattacaaatatgctgcagaaataggaatacaatatatcagcacagctctagggtcagagagagtacagcagattctaagaaactcaggcagtgaagttcaagcagttttaaccagaacatact... | 13,286 | MN306028.1 | MN306028.1 | Homo sapiens | Human metapneumovirus | Metapneumovirus hominis | Pneumoviridae | Metapneumovirus | ssRNA(-) | MN306028.1 |Human metapneumovirus strain HMPV/Seattle/USA/SC0380/2019, complete genome|set:MN306028|Human metapneumovirus|SRR17439936|2019-08-25T00:00:00Z|UW Virology, Laboratory Medicine|USA|Lin,M.J., Tait,A., Greninger,A.L.||Metapneumovirus hominis|Metapneumovirus|complete|Pneumoviridae|ssRNA(-)|13286|GenBank||||USA|... | 27 |
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Models trained or fine-tuned on DNA-LLM/vae_trainset