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MR-RATE-atlas

Tasks:
Image-to-Text
Text-to-Image
Image Classification
Languages:
English
Size:
10K<n<100K
Tags:
brain-mri
radiology
science
huggingscience
3d-medical-imaging
medical
License:
Dataset card Files
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Terms and Conditions for Using the MR-RATE Dataset 1. Acceptance of Terms Accessing and using the MR-RATE dataset implies your agreement to these terms and conditions. If you disagree with any part, please refrain from using the dataset.

2. Permitted Use

  • The dataset is intended solely for academic, research, and educational purposes.
  • Any commercial exploitation of the dataset without prior permission is strictly forbidden.
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  • Acknowledge the presence of sensitive information within the dataset and commit to maintaining data confidentiality.
  • Direct attempts to re-identify individuals from the dataset are prohibited.
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4. Attribution

  • Cite the dataset and acknowledge the providers in any publications resulting from its use.
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5. Redistribution

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The dataset is provided "as is" without warranty of any kind, either expressed or implied, including but not limited to the accuracy or completeness of the data.

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MR-RATE: A Vision-Language Foundation Model and Dataset for Magnetic Resonance Imaging

Paper (Coming soon)   |   GitHub   |   Dataset Repositories   |   Model Weights (Coming soon)

This is the MR-RATE-atlas repository, part of the MR-RATE dataset release. It contains atlas-registered brain MRI volumes in which all imaging sequences within each study have been spatially normalized to a standard atlas-space. For full dataset details, native-space MRI volumes, radiology reports, metadata, and data splits, please refer to the MR-RATE repository.

Atlas-Registered Brain MRI Volumes

Within each study, the T1-weighted brain MRI volume serving as the center modality is rigidly registered to the MNI152 (ICBM 2009c Nonlinear Symmetric) atlas using ANTs. The native-space moving modality brain MRI volumes, and the brain masks and defacing masks of center modalities from MR-RATE repository are then transformed to atlas-space by composing the native-to-center and center-to-atlas registration transforms, bringing all sequences of a given study into a standardized coordinate space that enables group-level analyses and cross-patient comparisons.

This repository provides:

  • Atlas-registered center modalities (in NIfTI format) — All T1-weighted center modality brain MRI volumes, and corresponding brain masks and defacing masks warped to atlas-space
  • Atlas-registered moving modalities (in NIfTI format) — All moving modality brain MRI volumes transformed to atlas-space
  • Registration transforms (in .mat format) — The ANTs registration transform files mapping each center modality to the atlas, enabling users to apply them in their custom workflows

Study folders are zipped to comply with Hugging Face's per-repository file count limits.

A detailed guide explaining the dataset organization, the preprocessing steps used, and download instructions is coming soon.

Citing Us

When using this dataset, please consider citing the following related papers:

Coming soon

Ethical Approval

Information for researchers who require ethical approval documentation for grant applications is coming soon.

License

We are committed to fostering innovation and collaboration in the research community. To this end, all elements of the MR-RATE dataset are released under a Creative Commons Attribution (CC BY-NC-SA 4.0) license. This licensing framework ensures that our contributions can be freely used for non-commercial research purposes, while also encouraging contributions and modifications, provided that the original work is properly cited and any derivative works are shared under similar terms.

For commercial inquiries related to MR-RATE, please contact: contact@forithmus.com.
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