Datasets:

JerMa88
/

TPR_Peer_Reviews

title stringlengths 28 102	full_text stringlengths 97 102k	review stringlengths 97 102k	source stringclasses 1 value	review_src stringlengths 18 25	criteria_count dict	dimension_scores dict	overall_score float64 0 3	conversations listlengths 2 2	year int64 2.01k 2.02k
ABHD4-dependent developmental anoikis safeguards the embryonic brain	Reviewers' Comments: Reviewer #1: Remarks to the Author: Prof. Katona and colleagues proposed developmental anoikis and the molecular player that controls this process. Developmental anoikis was triggered as a result of exposure to different types of insults. One is forced delamination of neural progenitor cells...	Reviewers' Comments: Reviewer #1: Remarks to the Author: Prof. Katona and colleagues proposed developmental anoikis and the molecular player that controls this process. Developmental anoikis was triggered as a result of exposure to different types of insults. One is forced delamination of neural progenitor cells...	TPR	NC_BS_BIOCH_001_RR1.txt	{ "criticism": 6, "example": 9, "importance_and_relevance": 8, "materials_and_methods": 39, "praise": 7, "presentation_and_reporting": 18, "results_and_discussion": 7, "suggestion_and_solution": 24, "total": 83 }	{ "criticism": 0.07228915662650602, "example": 0.10843373493975904, "importance_and_relevance": 0.0963855421686747, "materials_and_methods": 0.46987951807228917, "praise": 0.08433734939759036, "presentation_and_reporting": 0.21686746987951808, "results_and_discussion": 0.08433734939759036, "suggestion_a...	1.421687	[ { "content": "Please review this paper.", "role": "user" }, { "content": "Reviewers' Comments: \n \nReviewer #1: \nRemarks to the Author: \nProf. Katona and colleagues proposed developmental anoikis and the molecular player that \ncontrols this process. Developmental anoikis was triggered as a resul...	2,020
ABHD4-dependent developmental anoikis safeguards the embryonic brain	Reviewers' Comments: Reviewer #1: Remarks to the Author: The authors addressed all of points and the manuscript reads well. Reviewer #2: Remarks to the Author: The revised version of László et al. addresses the points raised during the previous round of review. I appreciate the fact that in the pre...	Reviewers' Comments: Reviewer #1: Remarks to the Author: The authors addressed all of points and the manuscript reads well. Reviewer #2: Remarks to the Author: The revised version of László et al. addresses the points raised during the previous round of review. I appreciate the fact that in the pre...	TPR	NC_BS_BIOCH_001_RR2.txt	{ "criticism": 0, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 1, "praise": 3, "presentation_and_reporting": 1, "results_and_discussion": 0, "suggestion_and_solution": 3, "total": 6 }	{ "criticism": 0, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 0.16666666666666666, "praise": 0.5, "presentation_and_reporting": 0.16666666666666666, "results_and_discussion": 0, "suggestion_and_solution": 0.5 }	1.333333	[ { "content": "Please review this paper.", "role": "user" }, { "content": "\n \n\n\fReviewers' Comments: \n \nReviewer #1: \nRemarks to the Author: \nThe authors addressed all of points and the manuscript reads well. \n \n \n \nReviewer #2: \nRemarks to the Author: \nThe revised version of László et ...	2,020
Dynamic remodelling of the human host cell proteome and phosphoproteome upon	Reviewers' comments: Reviewer #1 (Remarks to the Author): Giansanti et al. - Dynamic remodeling of the human host cell (phospho)proteome upon enterovirus infection GENERAL COMMENTS This manuscript explores the altered proteome in cells infected with Coxsackievirus B3. The authors use MS proteomics...	Reviewers' comments: Reviewer #1 (Remarks to the Author): Giansanti et al. - Dynamic remodeling of the human host cell (phospho)proteome upon enterovirus infection GENERAL COMMENTS This manuscript explores the altered proteome in cells infected with Coxsackievirus B3. The authors use MS proteomics...	TPR	NC_BS_BIOCH_002_RR1.txt	{ "criticism": 16, "example": 14, "importance_and_relevance": 5, "materials_and_methods": 48, "praise": 3, "presentation_and_reporting": 19, "results_and_discussion": 18, "suggestion_and_solution": 19, "total": 93 }	{ "criticism": 0.17204301075268819, "example": 0.15053763440860216, "importance_and_relevance": 0.053763440860215055, "materials_and_methods": 0.5161290322580645, "praise": 0.03225806451612903, "presentation_and_reporting": 0.20430107526881722, "results_and_discussion": 0.1935483870967742, "suggestion_a...	1.526882	[ { "content": "Please review this paper.", "role": "user" }, { "content": "Reviewers' comments: \n\n \n\nReviewer #1 (Remarks to the Author): \n\n \n\nGiansanti et al. - Dynamic remodeling of the human host cell (phospho)proteome upon enterovirus \ninfection \n\n \n\nGENERAL COMMENTS \n\n \n\nThis ma...	2,020
Dynamic remodelling of the human host cell proteome and phosphoproteome upon	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The revised version of this manuscript address all the questions and suggestions by the authors and in my opinion the majority of the concerns describe by the other reviewer. I believe that the inclusion of of additional experimental validations ...	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The revised version of this manuscript address all the questions and suggestions by the authors and in my opinion the majority of the concerns describe by the other reviewer. I believe that the inclusion of of additional experimental validations ...	TPR	NC_BS_BIOCH_002_RR2.txt	{ "criticism": 3, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 4, "praise": 1, "presentation_and_reporting": 3, "results_and_discussion": 4, "suggestion_and_solution": 2, "total": 15 }	{ "criticism": 0.2, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 0.26666666666666666, "praise": 0.06666666666666667, "presentation_and_reporting": 0.2, "results_and_discussion": 0.26666666666666666, "suggestion_and_solution": 0.13333333333333333 }	1.133333	[ { "content": "Please review this paper.", "role": "user" }, { "content": "\n\n\n\fREVIEWERS' COMMENTS: \n\n \n\nReviewer #1 (Remarks to the Author): \n\n \n\nThe revised version of this manuscript address all the questions and suggestions by the authors and \nin my opinion the majority of the concer...	2,020
Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): I am totally satisfied with the revisions made by the authors, in which all my comments have been addressed. Now the reaction mechanism of MDD proposed by the authors is updated appropriately and agrees well with recent knowledges of the enzyme. The com...	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): I am totally satisfied with the revisions made by the authors, in which all my comments have been addressed. Now the reaction mechanism of MDD proposed by the authors is updated appropriately and agrees well with recent knowledges of the enzyme. The com...	TPR	NC_BS_BIOCH_003_RR2.txt	{ "criticism": 0, "example": 3, "importance_and_relevance": 1, "materials_and_methods": 6, "praise": 6, "presentation_and_reporting": 6, "results_and_discussion": 3, "suggestion_and_solution": 4, "total": 19 }	{ "criticism": 0, "example": 0.15789473684210525, "importance_and_relevance": 0.05263157894736842, "materials_and_methods": 0.3157894736842105, "praise": 0.3157894736842105, "presentation_and_reporting": 0.3157894736842105, "results_and_discussion": 0.15789473684210525, "suggestion_and_solution": 0.2105...	1.526316	[ { "content": "Please review this paper.", "role": "user" }, { "content": "\n\n\fREVIEWERS' COMMENTS: \n\nReviewer #1 (Remarks to the Author): \n\nI am totally satisfied with the revisions made by the authors, in which all my comments have been \naddressed. Now the reaction mechanism of MDD proposed ...	2,020
Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase	Reviewers' comments: Reviewer #1 (Remarks to the Author): The manuscript “Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase” by C.-L. Chen et al. reports the structural studies on mevalonate decarboxylase from a vancomycin resistant enterococcus, Enterococcus faecalis (MDDEF). The authors s...	Reviewers' comments: Reviewer #1 (Remarks to the Author): The manuscript “Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase” by C.-L. Chen et al. reports the structural studies on mevalonate decarboxylase from a vancomycin resistant enterococcus, Enterococcus faecalis (MDDEF). The authors s...	TPR	NC_BS_BIOCH_003_RR1.txt	{ "criticism": 6, "example": 11, "importance_and_relevance": 2, "materials_and_methods": 27, "praise": 6, "presentation_and_reporting": 13, "results_and_discussion": 3, "suggestion_and_solution": 11, "total": 56 }	{ "criticism": 0.10714285714285714, "example": 0.19642857142857142, "importance_and_relevance": 0.03571428571428571, "materials_and_methods": 0.48214285714285715, "praise": 0.10714285714285714, "presentation_and_reporting": 0.23214285714285715, "results_and_discussion": 0.05357142857142857, "suggestion_...	1.410714	[ { "content": "Please review this paper.", "role": "user" }, { "content": "Reviewers' comments: \n\nReviewer #1 (Remarks to the Author): \n\nThe manuscript “Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase” by \nC.-L. Chen et al. reports the structural studies on mevalonate de...	2,020
Distinct Cdk9-phosphatase switches act at the beginning and end of elongation by RNA	Reviewer #1 (Remarks to the Author): The work by Parua et all demonstrates a conserved role of distinct phosphatases that work on SPT5 at distinct steps of the transcription cycle. By combining in vitro phosphatase assays with in vivo distribution of transcriptional components following perturbation (by mutation or...	Reviewer #1 (Remarks to the Author): The work by Parua et all demonstrates a conserved role of distinct phosphatases that work on SPT5 at distinct steps of the transcription cycle. By combining in vitro phosphatase assays with in vivo distribution of transcriptional components following perturbation (by mutation or...	TPR	NC_BS_BIOCH_004_RR1.txt	{ "criticism": 12, "example": 20, "importance_and_relevance": 3, "materials_and_methods": 39, "praise": 4, "presentation_and_reporting": 24, "results_and_discussion": 3, "suggestion_and_solution": 23, "total": 99 }	{ "criticism": 0.12121212121212122, "example": 0.20202020202020202, "importance_and_relevance": 0.030303030303030304, "materials_and_methods": 0.3939393939393939, "praise": 0.04040404040404041, "presentation_and_reporting": 0.24242424242424243, "results_and_discussion": 0.030303030303030304, "suggestion...	1.292929	[ { "content": "Please review this paper.", "role": "user" }, { "content": "Reviewer #1 (Remarks to the Author): \n\nThe work by Parua et all demonstrates a conserved role of distinct phosphatases that work on SPT5 at \ndistinct steps of the transcription cycle. By combining in vitro phosphatase assay...	2,020
Ion mobility collision cross-section atlas for known and unknown metabolite annotation in	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The authors have done a very thorough job of responding to my comments. I particularly welcome the additional results, especially those that show the improved performance with real MS/MS data (which is, I think, a more common use-case). I woul...	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The authors have done a very thorough job of responding to my comments. I particularly welcome the additional results, especially those that show the improved performance with real MS/MS data (which is, I think, a more common use-case). I woul...	TPR	NC_BS_BIOCH_005_RR2.txt	{ "criticism": 0, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 1, "praise": 3, "presentation_and_reporting": 0, "results_and_discussion": 1, "suggestion_and_solution": 0, "total": 3 }	{ "criticism": 0, "example": 0, "importance_and_relevance": 0, "materials_and_methods": 0.3333333333333333, "praise": 1, "presentation_and_reporting": 0, "results_and_discussion": 0.3333333333333333, "suggestion_and_solution": 0 }	1.666667	[ { "content": "Please review this paper.", "role": "user" }, { "content": "\n \n\n\fREVIEWERS' COMMENTS: \n\n \n\nReviewer #1 (Remarks to the Author): \n\n \n\nThe authors have done a very thorough job of responding to my comments. I particularly welcome \nthe additional results, especially those tha...	2,020
Ion mobility collision cross-section atlas for known and unknown metabolite annotation in	REVIEWER COMMENTS Reviewer #1 (Remarks to the Author): This paper described the creation and validation of an atlas of CCS values. The atlas is created using a combination of experimental CCS (merged from multiple databases) and in-silico predicted CCS. The authors show that they are able to predict CCS bet...	REVIEWER COMMENTS Reviewer #1 (Remarks to the Author): This paper described the creation and validation of an atlas of CCS values. The atlas is created using a combination of experimental CCS (merged from multiple databases) and in-silico predicted CCS. The authors show that they are able to predict CCS bet...	TPR	NC_BS_BIOCH_005_RR1.txt	{ "criticism": 7, "example": 8, "importance_and_relevance": 5, "materials_and_methods": 29, "praise": 10, "presentation_and_reporting": 17, "results_and_discussion": 8, "suggestion_and_solution": 16, "total": 83 }	{ "criticism": 0.08433734939759036, "example": 0.0963855421686747, "importance_and_relevance": 0.060240963855421686, "materials_and_methods": 0.3493975903614458, "praise": 0.12048192771084337, "presentation_and_reporting": 0.20481927710843373, "results_and_discussion": 0.0963855421686747, "suggestion_an...	1.204819	[ { "content": "Please review this paper.", "role": "user" }, { "content": "REVIEWER COMMENTS \n\n \n\nReviewer #1 (Remarks to the Author): \n\n \n\nThis paper described the creation and validation of an atlas of CCS values. The atlas is created using a \ncombination of experimental CCS (merged from m...	2,020
Complete chemical structures of human mitochondrial tRNAs	Reviewers' comments: Reviewer #1 (Remarks to the Author): tRNAs are central to the decoding process and the post-transcriptional modifications of tRNA are critical for tRNA function including stability, folding and decoding. It is known that disorders of mitochondrial translation may lead to the mitochondria dysf...	Reviewers' comments: Reviewer #1 (Remarks to the Author): tRNAs are central to the decoding process and the post-transcriptional modifications of tRNA are critical for tRNA function including stability, folding and decoding. It is known that disorders of mitochondrial translation may lead to the mitochondria dysf...	TPR	NC_BS_BIOCH_006_RR1.txt	{ "criticism": 7, "example": 6, "importance_and_relevance": 4, "materials_and_methods": 45, "praise": 7, "presentation_and_reporting": 10, "results_and_discussion": 4, "suggestion_and_solution": 15, "total": 76 }	{ "criticism": 0.09210526315789473, "example": 0.07894736842105263, "importance_and_relevance": 0.05263157894736842, "materials_and_methods": 0.5921052631578947, "praise": 0.09210526315789473, "presentation_and_reporting": 0.13157894736842105, "results_and_discussion": 0.05263157894736842, "suggestion_a...	1.289474	[ { "content": "Please review this paper.", "role": "user" }, { "content": "Reviewers' comments: \n\nReviewer #1 (Remarks to the Author): \n\ntRNAs are central to the decoding process and the post-transcriptional modifications of tRNA are critical \nfor tRNA function including stability, folding and d...	2,020
Complete chemical structures of human mitochondrial tRNAs	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The authors have addressed all my previous concerns and the revised manuscript has been improved. I thus strongly support the publication in Nature Communications. Reviewer #2 (Remarks to the Author): The authors addressed my questions. I have no fur...	REVIEWERS' COMMENTS: Reviewer #1 (Remarks to the Author): The authors have addressed all my previous concerns and the revised manuscript has been improved. I thus strongly support the publication in Nature Communications. Reviewer #2 (Remarks to the Author): The authors addressed my questions. I have no fur...	TPR	NC_BS_BIOCH_006_RR2.txt	{ "criticism": 1, "example": 0, "importance_and_relevance": 2, "materials_and_methods": 2, "praise": 4, "presentation_and_reporting": 0, "results_and_discussion": 2, "suggestion_and_solution": 1, "total": 10 }	{ "criticism": 0.1, "example": 0, "importance_and_relevance": 0.2, "materials_and_methods": 0.2, "praise": 0.4, "presentation_and_reporting": 0, "results_and_discussion": 0.2, "suggestion_and_solution": 0.1 }	1.2	[ { "content": "Please review this paper.", "role": "user" }, { "content": "\n\n\fREVIEWERS' COMMENTS: \n\nReviewer #1 (Remarks to the Author): \n\nThe authors have addressed all my previous concerns and the revised manuscript has been improved. I \nthus strongly support the publication in Nature Comm...	2,020

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Transparent Peer Review (TPR) Dataset

This dataset contains peer reviews from TPR, standardized to match the format of the pawin205/PeerRT dataset.

Dataset Structure

Each record contains the following attributes:

relative_rank: Default value (0).
win_prob: Default value (0.0).
title: Title of the paper.
abstract: Abstract of the paper.
full_text: Full text of the paper (or review text if unavailable).
review: The peer review text.
source: Source of the data ('TPR').
review_src: Original filename of the review.
criteria_count: Dictionary containing counts of specific criteria in the review (e.g., criticism, praise).
dimension_scores: Dictionary containing scores for various dimensions.
overall_score: Computed overall score (reward value).
thinking_trace: Placeholder (empty).
prompt: Placeholder (empty).
prompt_length: Placeholder (0).
conversations: List of dictionaries representing the conversation (User/Assistant format).
year: Year of publication (if available).

Usage

from datasets import load_dataset

dataset = load_dataset("JerMa88/TPR_Peer_Reviews")
print(dataset['train'][0])

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