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Shoriful025
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synthetic-biology-gene-circuit-optimization-v2

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train · 31 rows

circuit_id stringlengths 6 6	host_chassis stringclasses 5 values	promoter_part stringlengths 4 12	ribosome_binding_site stringclasses 4 values	reporter_gene stringclasses 7 values	terminator_type stringclasses 4 values	growth_medium stringclasses 7 values	temperature_c int64 25 42	induction_time_hr float64 0.5 48	fluorescence_au int64 5.4k 154k	metabolic_burden_score float64 0.03 0.65	is_stable_construct bool 2 classes	expression_profile stringlengths 9 24
GC_001	E_coli_K12	P_lac	RBS_Strong	sfGFP	T_rrnB	LB_Lennox	37	4	45,200	0.25	true	High_Burst
GC_002	E_coli_K12	P_lac	RBS_Weak	sfGFP	T_rrnB	LB_Lennox	37	4	8,400	0.05	true	Low_Basal
GC_003	E_coli_K12	P_tet	RBS_Med	mCherry	T_t7	M9_Minimal	30	6	12,500	0.12	true	Steady_State
GC_004	B_subtilis_168	P_veg	RBS_Strong	sfGFP	T_bsu1	TB_Rich	37	3	68,000	0.42	false	Metabolic_Failure
GC_005	B_subtilis_168	P_xyl	RBS_Med	YFP	T_bsu1	TB_Rich	30	8	31,200	0.18	true	Inducible_Gradient
GC_006	S_cerevisiae_S288C	P_GAL1	RBS_Yeast1	Luciferase	T_cyc1	YPD	30	12	154,000	0.35	true	Diauxic_Shift
GC_007	E_coli_BL21	P_t7	RBS_Strong	sfGFP	T_t7	LB_Lennox	37	2	92,000	0.65	false	Toxicity_Induced_Death
GC_008	E_coli_BL21	P_t7	RBS_Weak	sfGFP	T_t7	LB_Lennox	25	5	42,000	0.22	true	Slow_Folding
GC_009	P_putida_KT2440	P_alkB	RBS_Med	mScarlet	T_rrnB	M9_Acetate	30	10	18,500	0.08	true	Environmental_Responsive
GC_010	E_coli_K12	P_bad	RBS_Strong	sfGFP	T_rrnB	LB_Lennox	37	4	55,000	0.3	true	High_Burst
GC_011	E_coli_K12	P_bad	RBS_Med	sfGFP	T_rrnB	LB_Lennox	37	4	22,000	0.15	true	Moderate_Induction
GC_012	S_cerevisiae_S288C	P_ADH1	RBS_Yeast1	mTurquoise	T_cyc1	YPD	28	24	48,000	0.2	true	Constitutive_Medium
GC_013	B_subtilis_168	P_hyperspank	RBS_Strong	BFP	T_bsu1	M9_Glucose	37	5	15,000	0.1	true	Linear_Response
GC_014	E_coli_K12	P_lac	RBS_Strong	sfGFP	T_rrnB	M9_Glycerol	37	6	12,000	0.06	true	Nutrient_Limited
GC_015	E_coli_K12	P_trc	RBS_Med	sfGFP	T_rrnB	LB_Lennox	37	4	35,000	0.28	true	High_Burst
GC_016	P_putida_KT2440	P_pu	RBS_Strong	sfGFP	T_rrnB	LB_Lennox	30	6	28,000	0.14	true	Steady_State
GC_017	E_coli_BL21	P_t7	RBS_Med	mCherry	T_t7	TB_Rich	30	4	75,000	0.48	true	High_Burst
GC_018	S_cerevisiae_S288C	P_CUP1	RBS_Yeast1	sfGFP	T_cyc1	YPD	30	4	12,000	0.15	true	Metal_Inducible
GC_019	B_subtilis_168	P_spac	RBS_Med	sfGFP	T_bsu1	LB_Lennox	37	3	9,500	0.04	true	Low_Basal
GC_020	E_coli_K12	P_lac	RBS_Med	sfGFP	T_rrnB	LB_Lennox	37	2	14,000	0.09	true	Moderate_Induction
GC_021	E_coli_K12	P_lac	RBS_Strong	sfGFP	T_rrnB	LB_Lennox	42	4	21,000	0.38	true	Heat_Stress_Expression
GC_022	E_coli_K12	P_tet	RBS_Strong	YFP	T_t7	M9_Minimal	37	8	19,000	0.11	true	Steady_State
GC_023	S_cerevisiae_S288C	P_GAL1	RBS_Yeast1	sfGFP	T_cyc1	YPD	30	6	89,000	0.28	true	High_Burst
GC_024	B_subtilis_168	P_xyl	RBS_Strong	sfGFP	T_bsu1	TB_Rich	37	4	45,000	0.32	true	High_Burst
GC_025	P_putida_KT2440	P_alkB	RBS_Weak	mScarlet	T_rrnB	M9_Acetate	25	12	5,400	0.03	true	Low_Basal
GC_026	E_coli_BL21	P_t7	RBS_Strong	sfGFP	T_t7	LB_Lennox	37	0.5	15,000	0.12	true	Rapid_Response
GC_027	E_coli_K12	P_bad	RBS_Strong	mCherry	T_rrnB	LB_Lennox	37	5	41,000	0.25	true	High_Burst
GC_028	S_cerevisiae_S288C	P_ADH1	RBS_Yeast1	sfGFP	T_cyc1	M9_Glucose	28	48	62,000	0.22	true	Constitutive_Long_Term
GC_029	B_subtilis_168	P_veg	RBS_Med	sfGFP	T_bsu1	LB_Lennox	30	8	24,000	0.1	true	Steady_State
GC_030	E_coli_K12	P_trc	RBS_Weak	sfGFP	T_rrnB	LB_Lennox	37	4	11,000	0.07	true	Moderate_Induction
GC_031	E_coli_K12	P_lac	RBS_Med	sfGFP	T_rrnB	LB_Lennox	37	12	32,000	0.19	true	Sustained_Production

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