| LICENSE |
| MANIFEST.in |
| README.md |
| pyproject.toml |
| setup.cfg |
| setup.py |
| configs/finetuning/ft_parsecg.yaml |
| configs/training/bc_large.yaml |
| src/arc_stack.egg-info/PKG-INFO |
| src/arc_stack.egg-info/SOURCES.txt |
| src/arc_stack.egg-info/dependency_links.txt |
| src/arc_stack.egg-info/entry_points.txt |
| src/arc_stack.egg-info/requires.txt |
| src/arc_stack.egg-info/top_level.txt |
| src/stack/cli_utils.py |
| src/stack/dataloader.py |
| src/stack/finetuning_dataloader.py |
| src/stack/model.py |
| src/stack/model_finetune.py |
| src/stack/model_loading.py |
| src/stack/cli/__init__.py |
| src/stack/cli/embedding.py |
| src/stack/cli/generation.py |
| src/stack/cli/launch_finetuning.py |
| src/stack/cli/launch_training.py |
| src/stack/data/__init__.py |
| src/stack/data/datasets.py |
| src/stack/data/gene_processing.py |
| src/stack/data/h5_manager.py |
| src/stack/data/hvg.py |
| src/stack/data/finetuning/__init__.py |
| src/stack/data/finetuning/datasets.py |
| src/stack/data/training/__init__.py |
| src/stack/data/training/datasets.py |
| src/stack/finetune/__init__.py |
| src/stack/finetune/datamodule.py |
| src/stack/finetune/datasets.py |
| src/stack/finetune/lightning.py |
| src/stack/finetune/utils.py |
| src/stack/models/__init__.py |
| src/stack/models/utils.py |
| src/stack/models/core/__init__.py |
| src/stack/models/core/base.py |
| src/stack/models/core/inference.py |
| src/stack/models/core/losses.py |
| src/stack/models/finetune/__init__.py |
| src/stack/models/finetune/mixins.py |
| src/stack/models/finetune/model.py |
| src/stack/modules/__init__.py |
| src/stack/modules/attention.py |
| src/stack/modules/regularizers.py |
| src/stack/training/__init__.py |
| src/stack/training/datamodule.py |
| src/stack/training/lightning.py |
| src/stack/training/utils.py |
| tests/test_cli_help.py |
| tests/test_cli_smoke_runs.py |
| tests/test_cli_utils.py |
| tests/test_finetune_mixins.py |
| tests/test_model_core.py |
| tests/test_model_loading_import.py |
