repo stringlengths 9 49 | instance_id stringlengths 16 55 | base_commit stringlengths 40 40 | patch stringlengths 485 4.69k | test_patch stringlengths 519 22.5k | problem_statement stringlengths 123 10.8k | hints_text stringlengths 0 38.3k | created_at stringdate 2025-01-03 00:43:09 2025-01-31 23:26:11 | version stringlengths 3 20 | meta dict | install_config dict | FAIL_TO_PASS listlengths 1 12 | PASS_TO_PASS listlengths 0 2.23k | environment_setup_commit stringlengths 40 40 | docker_image stringlengths 55 94 | image_name stringlengths 55 94 | interface stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zarr-developers/zarr-python | zarr-developers__zarr-python-2655 | bb8ab0fa1f847eb95a545cd17af1c6ba51e69f65 | diff --git a/src/zarr/core/metadata/v2.py b/src/zarr/core/metadata/v2.py
index b9543306..29cf15a1 100644
--- a/src/zarr/core/metadata/v2.py
+++ b/src/zarr/core/metadata/v2.py
@@ -116,7 +116,13 @@ class ArrayV2Metadata(Metadata):
else:
return o.descr
if isinstance(o, nu... | diff --git a/tests/test_metadata/test_v2.py b/tests/test_metadata/test_v2.py
index 69dbd464..5a5bf5f7 100644
--- a/tests/test_metadata/test_v2.py
+++ b/tests/test_metadata/test_v2.py
@@ -9,6 +9,7 @@ import pytest
import zarr.api.asynchronous
import zarr.storage
from zarr.core.buffer import cpu
+from zarr.core.buffer... | Regression with 3.0.0rc1: reading zarr with tensorstore
### Zarr version
3.0.0rc1
### Numcodecs version
0.14.1
### Python Version
3.12
### Operating System
macOS, but also all on CI
### Installation
pip
### Description
With 3.0.0rc1 we observed some fails in napari --pre tests. Juan is already addressing one... | 2025-01-06 16:39:44 | 3.0 | {
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"has_hyperlinks"
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"packages": "requirements.txt",
"pip_packages": [
"pytest",
"pytest-cov",
"pytest-asyncio",
"pytest-accept",
... | [
"tests/test_metadata/test_v2.py::test_zstd_checksum"
] | [
"tests/test_metadata/test_v2.py::test_parse_zarr_format_valid",
"tests/test_metadata/test_v2.py::test_parse_zarr_format_invalid[None]",
"tests/test_metadata/test_v2.py::test_parse_zarr_format_invalid[1]",
"tests/test_metadata/test_v2.py::test_parse_zarr_format_invalid[3_0]",
"tests/test_metadata/test_v2.py:... | fae8fb907d5d1afb7fb479d2d9a514ff321c5ed5 | swerebench/sweb.eval.x86_64.zarr-developers_1776_zarr-python-2655:latest | swerebench/sweb.eval.x86_64.zarr-developers_1776_zarr-python-2655:latest | ||
marshmallow-code/marshmallow | marshmallow-code__marshmallow-2800 | ea26aeb08c37c4e4c5bd323689c873d14f13d58d | diff --git a/AUTHORS.rst b/AUTHORS.rst
index dc645c3c..a43a00f0 100644
--- a/AUTHORS.rst
+++ b/AUTHORS.rst
@@ -176,3 +176,4 @@ Contributors (chronological)
- Peter C `@somethingnew2-0 <https://github.com/somethingnew2-0>`_
- Marcel Jackwerth `@mrcljx` <https://github.com/mrcljx>`_
- Fares Abubaker `@Fares-Abubaker <... | diff --git a/tests/test_validate.py b/tests/test_validate.py
index 866276de..783e9006 100644
--- a/tests/test_validate.py
+++ b/tests/test_validate.py
@@ -205,6 +205,40 @@ def test_url_custom_scheme():
assert validator(url) == url
+@pytest.mark.parametrize(
+ "valid_url",
+ (
+ "file:///tmp/tmp123... | `fields.Url` does not accept `file` URLs without host
# Steps to reproduce
Run this test case:
```
import marshmallow as mm
class LOL(mm.Schema):
url = mm.fields.Url(schemes={'file'})
LOL().load(dict(url="file:///var/storage/somefile.zip"))
```
# Expected result
```
{'url': 'file:///var/storage/some... | sloria: we generally go the other way--merge into older release line then forward-port. but tbh it doesn't matter that much. happy to backport this if you don't have time to switch it
0xDEC0DE: Done. | 2025-01-21 19:27:58 | 3.25 | {
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"has_many_modified_files",
"has_many_hunks",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false,
"num_modified_files": 3
} | {
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"packages": "",
"pip_packages": [],
"pre_install": [],
"python": "3.11",
"reqs_path": [],
"test_cmd": "pytest --... | [
"tests/test_validate.py::test_url_accepts_valid_file_urls[file:///tmp/tmp1234]",
"tests/test_validate.py::test_url_accepts_valid_file_urls[file:///C:/Users/test/file.txt]",
"tests/test_validate.py::test_url_accepts_valid_file_urls[file:///home/user/documents/test.pdf]",
"tests/test_validate.py::test_url_accep... | [
"tests/test_validate.py::test_url_absolute_valid[http://example.org]",
"tests/test_validate.py::test_url_absolute_valid[https://example.org]",
"tests/test_validate.py::test_url_absolute_valid[ftp://example.org]",
"tests/test_validate.py::test_url_absolute_valid[ftps://example.org]",
"tests/test_validate.py:... | ea26aeb08c37c4e4c5bd323689c873d14f13d58d | swerebench/sweb.eval.x86_64.marshmallow-code_1776_marshmallow-2800:latest | swerebench/sweb.eval.x86_64.marshmallow-code_1776_marshmallow-2800:latest | |
probabl-ai/skore | probabl-ai__skore-1085 | 7e03c9c99c6d2ad3a234970bf3d475fa96639f46 | diff --git a/skore/src/skore/sklearn/_estimator/report.py b/skore/src/skore/sklearn/_estimator/report.py
index 94dc040..294f488 100644
--- a/skore/src/skore/sklearn/_estimator/report.py
+++ b/skore/src/skore/sklearn/_estimator/report.py
@@ -1,5 +1,7 @@
+import copy
import inspect
import time
+import warnings
from it... | diff --git a/skore/tests/unit/sklearn/test_estimator.py b/skore/tests/unit/sklearn/test_estimator.py
index 8fd2c54..b8f9b36 100644
--- a/skore/tests/unit/sklearn/test_estimator.py
+++ b/skore/tests/unit/sklearn/test_estimator.py
@@ -187,7 +187,8 @@ def test_estimator_report_from_fitted_estimator(binary_classification_d... | Follow-up EstimatorReport: freeze the estimator when it is a fitted estimator
Yesterday, we assess that a fitted estimator is prone to side effect. Let's take the following example:
```python
estimator = LinearRegression().fit(X, y)
reporter = EstimatorReport(estimator)
# altering estimator, we also alter the i... | github-actions[bot]: [Documentation preview](https://skoredoc.k.probabl.dev/1085) @ 055e9afc06128779db2b2224a755ddc698cf6ef0
<!-- Sticky Pull Request Commentdocumentation-preview -->
glemaitre: So putting here some comments that we had in a IRL discussion with @augustebaum. I did not evaluate the problem properly: for ... | 2025-01-10 15:17:19 | 0.5 | {
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"skore/tests/unit/sklearn/test_estimator.py::test_estimator_has_no_deep_copy",
"skore/tests/unit/sklearn/test_estimator.py::test_estimator_has_side_effects[True]"
] | [
"skore/tests/unit/sklearn/test_estimator.py::test_estimator_not_fitted[auto]",
"skore/tests/unit/sklearn/test_estimator.py::test_estimator_report_metrics_regression[r2]",
"skore/tests/unit/sklearn/test_estimator.py::test_estimator_report_metrics_binary_classification[precision]",
"skore/tests/unit/sklearn/tes... | 4bd8f2fba221dad77e37a2bbffa6c8201ace9f51 | swerebench/sweb.eval.x86_64.probabl-ai_1776_skore-1085:latest | swerebench/sweb.eval.x86_64.probabl-ai_1776_skore-1085:latest | |
owkin/PyDESeq2 | owkin__PyDESeq2-356 | 5a44961789b96edb8012c3b62ba650d9e14ed05a | diff --git a/pydeseq2/dds.py b/pydeseq2/dds.py
index 573efca..ff91a2e 100644
--- a/pydeseq2/dds.py
+++ b/pydeseq2/dds.py
@@ -87,6 +87,13 @@ class DeseqDataSet(ad.AnnData):
may be few or no genes which have no zero values.
``"iterative"``: fit size factors iteratively. (default: ``"ratio"``).
+ co... | diff --git a/tests/test_pydeseq2.py b/tests/test_pydeseq2.py
index 54c6119..a61682f 100644
--- a/tests/test_pydeseq2.py
+++ b/tests/test_pydeseq2.py
@@ -73,27 +73,22 @@ def test_size_factors_poscounts(counts_df, metadata):
def test_size_factors_control_genes(counts_df, metadata):
"""Test that the size_factors cal... | Option to specify control genes for fitting size factors
The original DESeq2 package enables one to specify "control genes" that are used to fit the size factors. These are genes that are not expected to be changing between samples. See: https://www.rdocumentation.org/packages/DESeq2/versions/1.12.3/topics/estimateSize... | 2025-01-10 10:23:49 | 0.5 | {
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],
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"is_lite": false,
"num_modified_files": 1
} | {
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"packages": "requirements.txt",
"pip_packages": [
"pytest",
"pytest-cov",
"pytest-xdist",
"pytest-mock",
"pyt... | [
"tests/test_pydeseq2.py::test_size_factors_control_genes"
] | [
"tests/test_pydeseq2.py::test_size_factors_ratio",
"tests/test_pydeseq2.py::test_size_factors_poscounts",
"tests/test_pydeseq2.py::test_deseq_independent_filtering_parametric_fit",
"tests/test_pydeseq2.py::test_deseq_independent_filtering_mean_fit",
"tests/test_pydeseq2.py::test_deseq_without_independent_fi... | 5a44961789b96edb8012c3b62ba650d9e14ed05a | swerebench/sweb.eval.x86_64.owkin_1776_pydeseq2-356:latest | swerebench/sweb.eval.x86_64.owkin_1776_pydeseq2-356:latest | ||
duo-labs/py_webauthn | duo-labs__py_webauthn-241 | aa365d75e58bb5c506226449a9b859897f024811 | diff --git a/webauthn/authentication/verify_authentication_response.py b/webauthn/authentication/verify_authentication_response.py
index 76a11dd..6674f2e 100644
--- a/webauthn/authentication/verify_authentication_response.py
+++ b/webauthn/authentication/verify_authentication_response.py
@@ -35,7 +35,6 @@ class Verifie... | diff --git a/tests/test_verify_authentication_response.py b/tests/test_verify_authentication_response.py
index fe56630..4e3e5a7 100644
--- a/tests/test_verify_authentication_response.py
+++ b/tests/test_verify_authentication_response.py
@@ -43,7 +43,6 @@ class TestVerifyAuthenticationResponse(TestCase):
assert... | Tweak SafetyNet check
SafetyNet-based attestation is on its way out for Android Keystore attestation via Play Integrity (if I'm understanding https://developer.android.com/privacy-and-security/safetynet/deprecation-timeline and https://android-developers.googleblog.com/2024/09/attestation-format-change-for-android-fido... | 2025-01-16 22:04:58 | 2.4 | {
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"has_hyperlinks",
"has_many_modified_files",
"has_pytest_match_arg"
],
"has_test_patch": true,
"is_lite": false,
"num_modified_files": 2
} | {
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"packages": "requirements.txt",
"pip_packages": [
"pytest"
],
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"python": "3.9",
"reqs_path": [
"requ... | [
"tests/test_verify_registration_response_android_safetynet.py::TestVerifyRegistrationResponseAndroidSafetyNet::test_verify_attestation_android_safetynet_basic_integrity_true_cts_profile_match_false"
] | [
"tests/test_verify_authentication_response.py::TestVerifyAuthenticationResponse::test_raises_exception_on_incorrect_public_key",
"tests/test_verify_authentication_response.py::TestVerifyAuthenticationResponse::test_raises_exception_on_uv_required_but_false",
"tests/test_verify_authentication_response.py::TestVe... | aa365d75e58bb5c506226449a9b859897f024811 | swerebench/sweb.eval.x86_64.duo-labs_1776_py_webauthn-241:latest | swerebench/sweb.eval.x86_64.duo-labs_1776_py_webauthn-241:latest | ||
rollbar/pyrollbar | rollbar__pyrollbar-468 | b7b489df3daf53ec90c0cfe6fb190061cdfc0bd7 | diff --git a/rollbar/__init__.py b/rollbar/__init__.py
index 2a3a62d..d9a9c56 100644
--- a/rollbar/__init__.py
+++ b/rollbar/__init__.py
@@ -268,6 +268,7 @@ SETTINGS = {
'environment': 'production',
'exception_level_filters': [],
'root': None, # root path to your code
+ 'host': None, # custom hostna... | diff --git a/rollbar/test/test_rollbar.py b/rollbar/test/test_rollbar.py
index 29daf3d..eeb77db 100644
--- a/rollbar/test/test_rollbar.py
+++ b/rollbar/test/test_rollbar.py
@@ -74,14 +74,16 @@ class RollbarTest(BaseTest):
self.assertIn('argv', server_data)
self.assertNotIn('branch', server_data)
... | Unable to Override the Host name
I'm integrating the RollBar with python for our project that ran on Docker.
But I can't override the host name of Server. Rollbar is only reporting default host name. How can I change the host name ? | 2025-01-17 16:45:21 | 1.1 | {
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"is_lite": true,
"num_modified_files": 1
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"packages": "requirements.txt",
"pip_packages": [
"webob",
"blinker",
"httpx",
"pytest"
],
"pre_install": [
... | [
"rollbar/test/test_rollbar.py::RollbarTest::test_server_data"
] | [
"rollbar/test/test_rollbar.py::RollbarTest::test_502_failsafe",
"rollbar/test/test_rollbar.py::RollbarTest::test_all_project_frames_have_locals",
"rollbar/test/test_rollbar.py::RollbarTest::test_anonymous_tuple_args",
"rollbar/test/test_rollbar.py::RollbarTest::test_args_constructor",
"rollbar/test/test_rol... | 8805c6f98d8904e412c7411c34dc318a9f2eb006 | swerebench/sweb.eval.x86_64.rollbar_1776_pyrollbar-468:latest | swerebench/sweb.eval.x86_64.rollbar_1776_pyrollbar-468:latest | ||
statsmodels/statsmodels | statsmodels__statsmodels-9468 | 831e26ca5dfb087658500f08236a30b99b3f4501 | diff --git a/statsmodels/tsa/vector_ar/svar_model.py b/statsmodels/tsa/vector_ar/svar_model.py
index 6af60aa92..02375d8e1 100644
--- a/statsmodels/tsa/vector_ar/svar_model.py
+++ b/statsmodels/tsa/vector_ar/svar_model.py
@@ -78,12 +78,14 @@ class SVAR(tsbase.TimeSeriesModel):
A = np.identity(self.neqs)
... | diff --git a/statsmodels/tsa/vector_ar/tests/test_svar.py b/statsmodels/tsa/vector_ar/tests/test_svar.py
index 58f35dce7..b53adeb14 100644
--- a/statsmodels/tsa/vector_ar/tests/test_svar.py
+++ b/statsmodels/tsa/vector_ar/tests/test_svar.py
@@ -74,3 +74,32 @@ class TestSVAR:
# Windows precision limits require ... | Bug when trying to estimate SVAR because of changes in numpy
I am trying to estimate a two equation SVAR model using statsmodels but I am facing an issue. For reference, I am using the following code where 'subset' is just a pandas dataframe with two columns (the two series for the variables of the system) and a time s... | pep8speaks: Hello @josef-pkt! Thanks for opening this PR. We checked the lines you've touched for [PEP 8](https://www.python.org/dev/peps/pep-0008) issues, and found:
* In the file [`statsmodels/tsa/vector_ar/tests/test_svar.py`](https://github.com/statsmodels/statsmodels/blob/598c137fdd56b22e8a4b8d7ef99c3dc70b1aaa0... | 2025-01-05 21:27:18 | 0.14 | {
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] | [
"statsmodels/tsa/vector_ar/tests/test_svar.py::TestSVAR::test_basic",
"statsmodels/tsa/vector_ar/tests/test_svar.py::TestSVAR::test_llf_ic",
"statsmodels/tsa/vector_ar/tests/test_svar.py::TestSVAR::test_irf",
"statsmodels/tsa/vector_ar/tests/test_svar.py::TestSVAR::test_A",
"statsmodels/tsa/vector_ar/tests/... | 17d96d0007eb46a0e8483e912a6bd2d01923907c | swerebench/sweb.eval.x86_64.statsmodels_1776_statsmodels-9468:latest | swerebench/sweb.eval.x86_64.statsmodels_1776_statsmodels-9468:latest | |
pandas-dev/pandas | pandas-dev__pandas-60691 | 0110487d4bccf3f7498c22a71e6a0dfdb3be3a16 | diff --git a/doc/source/whatsnew/v3.0.0.rst b/doc/source/whatsnew/v3.0.0.rst
index 94c289ef3a..5cc258a54f 100644
--- a/doc/source/whatsnew/v3.0.0.rst
+++ b/doc/source/whatsnew/v3.0.0.rst
@@ -798,6 +798,7 @@ Other
- Bug in :meth:`Series.dt` methods in :class:`ArrowDtype` that were returning incorrect values. (:issue:`5... | diff --git a/pandas/tests/frame/methods/test_replace.py b/pandas/tests/frame/methods/test_replace.py
index b2320798ea..c95806d931 100644
--- a/pandas/tests/frame/methods/test_replace.py
+++ b/pandas/tests/frame/methods/test_replace.py
@@ -713,6 +713,13 @@ class TestDataFrameReplace:
)
tm.assert_frame_... | BUG: ValueError in pandas.DataFrame.replace with regex on single-row DataFrame with None/NaN
### Pandas version checks
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the [latest version](https://pandas.pydata.org/docs/whatsnew/index.html) of pandas.
- [X... | 2025-01-10 06:21:42 | 2.3 | {
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"install": "pip install -q meson-python meson Cython numpy versioneer[toml] ninja && sed -i \"s/dependencies: ext_dict.get('deps', '')/dependencies: ext_dict.get('deps', [])/\" pandas/_libs/tslibs/meson.build && sed -i \"s/dependencies: ext_dict.get(... | [
"pandas/tests/frame/methods/test_replace.py::TestDataFrameReplace::test_replace_all_NA",
"pandas/tests/series/methods/test_replace.py::TestSeriesReplace::test_replace_all_NA"
] | [
"pandas/tests/frame/methods/test_replace.py::TestDataFrameReplace::test_replace_inplace",
"pandas/tests/frame/methods/test_replace.py::TestDataFrameReplace::test_regex_replace_list_obj[True-True-to_replace0-values0-expected0]",
"pandas/tests/frame/methods/test_replace.py::TestDataFrameReplace::test_regex_replac... | 543680dcd9af5e4a9443d54204ec21e801652252 | swerebench/sweb.eval.x86_64.pandas-dev_1776_pandas-60691:latest | swerebench/sweb.eval.x86_64.pandas-dev_1776_pandas-60691:latest | ||
astropy/astropy | astropy__astropy-17642 | 92b38aebbba6422890f1023031558f6df738e2a5 | diff --git a/astropy/io/fits/hdu/base.py b/astropy/io/fits/hdu/base.py
index 7fca455fa3..cbf6bf5f83 100644
--- a/astropy/io/fits/hdu/base.py
+++ b/astropy/io/fits/hdu/base.py
@@ -19,7 +19,6 @@ from astropy.io.fits.util import (
_free_space_check,
_get_array_mmap,
_is_int,
- _is_pseudo_integer,
de... | diff --git a/astropy/io/fits/tests/test_hdulist.py b/astropy/io/fits/tests/test_hdulist.py
index ece20333c4..308d9877f4 100644
--- a/astropy/io/fits/tests/test_hdulist.py
+++ b/astropy/io/fits/tests/test_hdulist.py
@@ -178,6 +178,32 @@ class TestHDUListFunctions(FitsTestCase):
with pytest.raises(ValueError):
... | Bug copying HDUs with scaled data from one file to another
This is yet another example of how broken the current data model is for FITS data.
When copying an HDU from one file to another, for example like:
``` python
source = fits.open('path/to/source.fits', do_not_scale_image_data=True)
with fits.open('path/to/dest.... | 2025-01-16 21:10:43 | 7.0 | {
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"failed_lite_validators": [
"has_added_files",
"has_many_modified_files",
"has_many_hunks"
],
"has_test_patch": true,
"is_lite": false,
"num_modified_files": 2
} | {
"docker_specs": null,
"env_vars": null,
"env_yml_path": [],
"install": "pip install -e . --quiet && pip install pytest hypothesis pytest-doctestplus scipy pytest-astropy-header pytest-remotedata --quiet && echo 'aW1wb3J0IHJlCgojIFBhdGNoIDE6IEZpeCBpbjFkIGRlY29yYXRvcgp3aXRoIG9wZW4oJy90ZXN0YmVkL2FzdHJvcHkvdW5pdH... | [
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctions::test_append_scaled_image_with_do_not_scale_image_data[True-scale.fits]",
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctions::test_append_scaled_image_with_do_not_scale_image_data[True-fixed-1890.fits]",
"astropy/io/fits/tests/test_hdulist.p... | [
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctions::test_update_name",
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctions::test_hdu_file_bytes",
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctions::test_hdulist_file_info",
"astropy/io/fits/tests/test_hdulist.py::TestHDUListFunctio... | 92b38aebbba6422890f1023031558f6df738e2a5 | swerebench/sweb.eval.x86_64.astropy_1776_astropy-17642:latest | swerebench/sweb.eval.x86_64.astropy_1776_astropy-17642:latest |
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