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Datasets:
imageomics
/
TreeOfLife-200M

Tasks:
Image Classification
Zero-Shot Classification
Modalities:
Text
Image
Formats:
parquet
Languages:
English
Latin
Size:
100M - 1B
ArXiv:
Tags:
biology
image
imageomics
animals
evolutionary biology
CV
DOI:
Libraries:
Datasets
pandas
Polars
License:
Dataset card Data Studio Files
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 Community
18

Add bibliographicCitation & Fix broken links

#18
by netzhang - opened
base: refs/heads/main
←
from: refs/pr/18
Discussion Files changed
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Commit history is no longer available for this pull request.
netzhang
 HDR Imageomics Institute org
•
edited 14 days ago

Summary

  • Added bibliographicCitation column to provenance.parquet, sourced from GBIF occurrence data (2024-05-01 snapshot)
  • about 5.3M GBIF records (~2.5%) have citation values; non-GBIF records (EOL, BIOSCAN, FathomNet) have null values
  • Fixed broken provenance link in dataset card (missing dataset/ prefix in path)
  • Updated dataset card to document the new column

Details

  • Join key: provenance.source_id = occurrence.gbifID (GBIF rows only)
  • Citation coverage is limited by what GBIF publishers provide — only ~5% of the full occurrence snapshot has bibliographicCitation populated, and most of those are not Still Image records
  • File recompressed with ZSTD to match original compression (8.76 GB vs original 8.71 GB)
  • Row count unchanged: 213,937,319
netzhang
 HDR Imageomics Institute org

@egrace479

GBIF Snapshot total Still Image occurrence is 169,382,827

Among these occurrence, 6,580,853 has bibliographicCitation available.

Roughly 3.88%

Total unique GBIF occurrence in provonence is 137,889,713

Among these occurrence, 4,244,238 has bibliographicCitation available. Roughly 3.08%

Total number of records with this attribute available is 5,265,374.

egrace479 changed pull request status to open
egrace479 changed pull request status to merged
egrace479 deleted the refs/pr/18 ref

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