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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'id', 'concepts', 'caption', 'concepts_manual'}) and 2 missing columns ({'CUI', 'Canonical name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/saad003/Dataset_final/metadata.csv (at revision 21c21350340b1c7ada55181813f90c360a217cbb)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
id: string
caption: string
concepts: string
concepts_manual: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 727
to
{'CUI': Value('string'), 'Canonical name': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1339, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 972, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 894, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 970, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'id', 'concepts', 'caption', 'concepts_manual'}) and 2 missing columns ({'CUI', 'Canonical name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/saad003/Dataset_final/metadata.csv (at revision 21c21350340b1c7ada55181813f90c360a217cbb)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
CUI string | Canonical name string |
|---|---|
C0016522 | Foramen Ovale, Patent |
C0457846 | Cervical segment of spinal cord |
C0578537 | Cavitation of lung |
C0179751 | Epidural catheter |
C3489393 | Hiatal Hernia |
C0730166 | Bone structure of fifth metacarpal |
C1261077 | Structure of left lower lobe of lung |
C0152443 | Urethral diverticulum |
C0227301 | Descending part of duodenum |
C0031354 | Pharyngeal structure |
C4039172 | Posterior point of nasal spine |
C0227387 | Left colic flexure |
C0227385 | Hepatic flexure of colon |
C0228126 | Leptomeninges |
C0230436 | Popliteal fossa structure |
C0037922 | Spinal Canal |
C1260954 | Morphologically altered structure |
C0450184 | Jejunal loop |
C0729936 | Cardiac chamber structure |
C0032718 | Portal vein structure |
C0149543 | Base of skull structure |
C0027540 | Necrosis |
C0582254 | Entire intrahepatic part of main portal vein |
C0227375 | Ascending colon |
C0006441 | Synovial bursa |
C0041967 | Urethra |
C0729538 | Saphenous vein graft |
C0007144 | Cardia of stomach |
C0341539 | Parastomal hernia |
C0085221 | Structure of psoas muscle |
C0007473 | Structure of cavernous sinus |
C0227997 | Structure of right testis |
C0015426 | Eyelid structure |
C0013303 | Duodenum |
C0162859 | Common carotid artery |
C0333161 | Pseudocyst |
C1261084 | Common iliac artery structure |
C0225708 | Structure of base of right lung |
C2973725 | Pulmonary arterial hypertension |
C0224378 | Structure of transversus abdominis muscle |
C0007966 | Cheek structure |
C1321756 | Achalasia |
C0028784 | Occipital bone structure |
C0007531 | Cecum |
C0227457 | Structure of left parotid gland |
C0042232 | Vagina |
C0264972 | Aneurysm of hepatic artery |
C0341318 | Enterocutaneous Fistula |
C0003855 | Arteriovenous fistula |
C0262431 | Compression fracture of vertebral column |
C0040761 | Transposition of Great Vessels |
C0226707 | Structure of middle hepatic vein |
C0184149 | Nephrostomy tube |
C1261316 | Right coronary artery structure |
C0013687 | effusion |
C0010384 | Prostheses, Dental, Fixed, Crown, Total, Temporary |
C0442872 | Multiple cysts |
C0225599 | Tracheal bronchus |
C0001863 | Air bubble |
C0228515 | Cerebellar peduncle |
C0004455 | Structure of axillary artery |
C0230140 | Structure of right thoracic cavity |
C0026764 | Multiple Myeloma |
C0042591 | Vessel Positions |
C1275667 | Common femoral vein |
C0227011 | Neck of tooth |
C5231045 | Structure of prostatic artery |
C1305393 | Entire posterior fossa of cranial cavity |
C0007276 | Internal carotid artery structure |
C0011906 | Differential Diagnosis |
C0224234 | Structure of deltoid muscle |
C0206635 | Myelolipoma |
C0227472 | Structure of submaxillary duct |
C0225261 | Iliac fascia structure |
C1288329 | Structure of lower uterine segment |
C0003090 | Ankylosis |
C0038001 | Structure of splenic vein |
C0546483 | Lung cyst |
C0013075 | Structure of rectouterine pouch |
C0020164 | Bone structure of humerus |
C0587240 | Erosion of bone |
C0227230 | Body of stomach |
C0224445 | Structure of vastus medialis muscle |
C0152254 | Fatty degeneration |
C0223741 | Trapezoid bone structure |
C0224419 | Structure of psoas major muscle |
C0227028 | Maxillary teeth |
C0227560 | Structure of left hepatic duct |
C0025202 | melanoma |
C1456806 | Entire pulmonary vein |
C0222647 | Structure of long bone |
C0226087 | Left common carotid artery structure |
C0581269 | Thoracic spine structure |
C0223947 | Navicular Bone of Foot |
C0223078 | Transverse Processes |
C0020663 | Hypothalamic structure |
C0227716 | Neck of urinary bladder |
C0333186 | Restenosis |
C0332448 | Infiltration |
C0240708 | Calcification of pericardium |
End of preview.
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