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MedText-Clinical-Processed
📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo
This is the processed version of MedText-Clinical dataset, containing structured medical entities and relations extracted using BiomedBERT-Large.
Dataset
| Dataset | Link |
|---|---|
| MedText-Clinical-Processed | 🤗 |
Please also check the raw data: toolevalxm/MedText-Clinical-Raw.
Models Used
- BiomedBERT-Large for entity extraction
- Clinical-Longformer for relation classification
Introduction
We use a pipeline approach combining BiomedBERT-Large for named entity recognition and Clinical-Longformer for relation extraction. The processing extracts medical concepts (diseases, medications, procedures) and their relationships from raw clinical notes.
*Due to licensing requirements, we only release the de-identified subset of the full dataset.
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